Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01376 ATGACCGGCAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAAGTGCTAGAGTTGAAAGATCTGCTGATCAGGTCCAAACCAACAACAAGGTTTCAAGATTATTCTCTGGAACACAGGAAAAGTGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTGGCTGTTGATGGTAAATCTTACCACAAGTCTTGTTTCAGGTGCACCCATGGAGGTTGTGTAATAAGCCCATCAAATTATGTTGCCCATGAACATCGTCTTTATTGTAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGCAACTTCAGTCAATTAGACAAGCATGAAAATGTCCAAGTCATCACTGAGAACACAACACAACATCCGGATCCCAGTAATGGCAATACTGATCATACAACTCCAGCTGAGGACTCTAGTTAA 426 0.4202 MTGSLDKSFEGIPRSARVERSADQVQTNNKVSRLFSGTQEKCVGCKKTVYPIEKVAVDGKSYHKSCFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKHENVQVITENTTQHPDPSNGNTDHTTPAEDSS 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01376 141 SMART lim_4 41 93 IPR001781 -
Pumo4g01376 141 Pfam LIM domain 42 97 IPR001781 -
Pumo4g01376 141 PANTHER OS06G0237300 PROTEIN 37 125 - -
Pumo4g01376 141 ProSiteProfiles LIM domain profile. 40 100 IPR001781 -
Pumo4g01376 141 CDD LIM2_SF3 42 102 - -
Pumo4g01376 141 Gene3D Cysteine Rich Protein 36 106 - -
Pumo4g01376 141 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 68 106 - -
Pumo4g01376 141 MobiDBLite consensus disorder prediction 118 141 - -
Pumo4g01376 141 MobiDBLite consensus disorder prediction 1 24 - -
Pumo4g01376 141 FunFam LIM domain and actin-binding 1 36 106 - -
Pumo4g01376 141 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 34 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01376 Pumo-Chr4 17444837 17446561 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo4g01376 LIM 1.2e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01376 K09377 - gmx:100792627 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01376 4 17444837 17446561 Pumo4g01376 4 17444837 17446561 ECH
Pumo4g01376 4 17444837 17446561 Pumo10g02073 10 27929912 27934160 PCT