Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01365 ATGAGCATCTCAATTCCCAATCGTCAGTTATTCGTTAACGGAGACTGGAAAGTCCCCGTTCTCAACAAACGAATTCCCGTCATCAACCCCGCCACCGAGCAGATCATCGGGGATATTCCAGCCGCTACTAAGGAAGACGTGGACCTCGCTGTCGCTGCCGCCAAAGCTGCTCTCTCCCGCAACAAGGGAGCGGATTGGGCCTCCGCTTCGGGCTCCGTTCGGGCCCGCTATCTCCGCGCCATCGCTGCCAAGATCACCGAGAAAAAGCCTCAGCTGGCAAAACTCGAAGCCATTGACTCTGGAAAACCGCTCGATGAAGCCGCCTGGGACATCGACGATGTTGCTGGTTGCTTTGAGTTCTACGCTGACCTGGCCGAAAAATTGGACGCCAAGCAAAAGGCTCCTGTGTCTCTTCCCATGGACACATTCAAGAGTTATGTCCTTAAGGAGCCAATTGGGGTCGTTGCTTTAATAACTCCCTGGAATTACCCTCTGTTGATGGCTACGTGGAAGGTTGCTCCGGCTTTGGCCGCTGGCTGTGCTGCAATATTGAAGCCCTCTGAGTTGGCATCTGTGACGTGTTTGGAGCTCGCTGAAATTTGCAAAGAAGTGGGCCTTCCTCCTGGTGTGTTGAACATTCTCACTGGATTAGGGCCTGAAGCTGGTGCTCCTTTGGCAGCCCATCCTGATGTAGACAAGATTGCCTTTACTGGAAGCTCTGCAACTGGGAGCAAGATTATGACATGCTGCAGCTCAGCTGATCAAGGTATTTTTAAGCAGTTATCTCCTGTTTCACTAGAGCTTGGTGGGAAAAGCCCAATCATTGTTTTTGAGGATGTTGACCTTGACAAGGCTGCTGAATGGACCATCTTTGGCTGCTTCTGGACAAATGGTCAGATATGCAGCGCAACTTCCCGCCTTATTGTACATGAAAGTATAGCAACAGAATTTTTGAATAGGATTGTGAAATGGGTCAAAAACATCAAAATTTCTGATCCCTTGGAAGAAGGTTGCAGACTAGGTCCTATTGTTAGTGAAGGACAGTATGAAAAGATATTGAAGTTTATCTCAAATGCTAAGAGTGAGGGTGCAACCATTTTGACTGGTGGGTCTCGCCCAGAGCATCTAAAGAAGGGATTCTTTGTTGAACCAACTGTCATAACTGATGTGACTACCTCCATGCAAATTTGGAGGGAAGAAGTATTTGGACCTGTTCTCTGTGTAAAAACATTTAGCACTGAGGAAGAAGCTATTGATCTAGCAAATGACACTGTATATGGCTTGGGTTCTGCTGTAATATCAAATGATCTAGAAAGATGTGAGCGCATTACTAAGGCTTTTAAGGCTGGAATTGTGTGGATTAATTGCTCTCAACCATGCTTCACTCAAGCCCCATGGGGAGGCATTAAACGCAGTGGTTTTGGTCGTGAATTAGGAGAATGGGGACTTGATAATTACTTAAGTGTGAAGCAAGTGACTCAGTATATCTCTGATGAACCGTGGGGCTGGTACCAGTCTCCTTCAAGGCTGTGA 1533 0.4749 MSISIPNRQLFVNGDWKVPVLNKRIPVINPATEQIIGDIPAATKEDVDLAVAAAKAALSRNKGADWASASGSVRARYLRAIAAKITEKKPQLAKLEAIDSGKPLDEAAWDIDDVAGCFEFYADLAEKLDAKQKAPVSLPMDTFKSYVLKEPIGVVALITPWNYPLLMATWKVAPALAAGCAAILKPSELASVTCLELAEICKEVGLPPGVLNILTGLGPEAGAPLAAHPDVDKIAFTGSSATGSKIMTCCSSADQGIFKQLSPVSLELGGKSPIIVFEDVDLDKAAEWTIFGCFWTNGQICSATSRLIVHESIATEFLNRIVKWVKNIKISDPLEEGCRLGPIVSEGQYEKILKFISNAKSEGATILTGGSRPEHLKKGFFVEPTVITDVTTSMQIWREEVFGPVLCVKTFSTEEEAIDLANDTVYGLGSAVISNDLERCERITKAFKAGIVWINCSQPCFTQAPWGGIKRSGFGRELGEWGLDNYLSVKQVTQYISDEPWGWYQSPSRL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01365 510 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 284 - -
Pumo4g01365 510 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 266 273 IPR029510 GO:0016491
Pumo4g01365 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 274 465 IPR016163 GO:0016620
Pumo4g01365 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 490 IPR016162 GO:0016491
Pumo4g01365 510 SUPERFAMILY ALDH-like 5 493 IPR016161 GO:0016491
Pumo4g01365 510 CDD ALDH_F10_BADH 27 494 - -
Pumo4g01365 510 FunFam Betaine aldehyde dehydrogenase 270 461 - -
Pumo4g01365 510 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 294 305 IPR016160 GO:0016491
Pumo4g01365 510 PANTHER ALDEHYDE DEHYDROGENASE 4 509 - -
Pumo4g01365 510 Pfam Aldehyde dehydrogenase family 23 492 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01365 Pumo-Chr4 17291487 17295495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01365 1 508 Aldehyde Dehydrogenase Gene Family AT1G74920 78.346 0.0 846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01365 4 17291487 17295495 Pumo4g01365 4 17291487 17295495 ECH
Pumo4g01365 4 17291487 17295495 Pumo10g02082 10 28121904 28128192 PCT