Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01351 ATGTCTCGCGCCTGCGCCGCCGCGGACTCCGCCGCTTCCGGCGAGATCATGCTCTTCGGCGTCAGAGTCGTCGTCGATTCGATGAGGAAGAGCGTCAGCATGAACAATCTCTCACAGTACGAGCATCCTCAAGACGCCAACAACAACAACAACAAAGACTCTCTCGCCGCCGGTTACGCCTCCGCCGATGACGCCGCTCCTCACAACTCCGGCCGGCACCGTGAGCGCGAGCGAAAGCGAGGTGTTCCGTGGACGGAGGAAGAACACAAGCTGTTTTTGGTTGGATTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGAATCTCCAAAAACTACGTCAAAACGCGAACGCCGACGCAGGTTGCAAGCCATGCTCAGAAGTACTTTCTCCGCCGAAGCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTTGACATCACCACCGACACGGTCTCTGCAATTCCAATTGAGGAAGAACAGGTCCAGAATCAAGACACCCTGTTGTCTCATTCACAACCTGTGTGCCCTGCAGTCCCTGAAACTAGCAAAATCAGTGGATTTCCAATGATGCCAGTGTATCAGTTTGGGGTTGGTTCTGGAGTGATTTCAGTCCAAGGTGGAAACCCAATGGAAGAACTCACTCTGGGACAAGGAAACGTGGAAAAACACAATGTGCCAAACAAGGCCTCTACAGTGTCTGATATCATCGCCCCGAGTTCTAGTTCTGCCGTTGACCCACCGACACTGTCCCTGGGGCTATCCTTCTCATCTGACCAAAGGCAGACATCATCAAGACATTCAGCTTTACATGCCATACAATGTTTCAGCAATGGAGATAGCATCATTAGTGTTGCTTGA 858 0.5245 MSRACAAADSAASGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDANNNNNKDSLAAGYASADDAAPHNSGRHRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPIEEEQVQNQDTLLSHSQPVCPAVPETSKISGFPMMPVYQFGVGSGVISVQGGNPMEELTLGQGNVEKHNVPNKASTVSDIIAPSSSSAVDPPTLSLGLSFSSDQRQTSSRHSALHAIQCFSNGDSIISVA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01351 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 132 IPR017930 -
Pumo4g01351 285 ProSiteProfiles SANT domain profile. 79 132 IPR017884 -
Pumo4g01351 285 NCBIfam myb-like DNA-binding domain, SHAQKYF class 79 130 IPR006447 GO:0003677
Pumo4g01351 285 MobiDBLite consensus disorder prediction 62 83 - -
Pumo4g01351 285 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Pumo4g01351 285 MobiDBLite consensus disorder prediction 67 83 - -
Pumo4g01351 285 CDD SANT 83 128 IPR001005 -
Pumo4g01351 285 Gene3D - 82 134 - -
Pumo4g01351 285 ProSiteProfiles Myb-like domain profile. 76 128 IPR001005 -
Pumo4g01351 285 SUPERFAMILY Homeodomain-like 78 133 IPR009057 -
Pumo4g01351 285 SMART sant 80 130 IPR001005 -
Pumo4g01351 285 FunFam transcription factor MYB1R1 82 133 - -
Pumo4g01351 285 PANTHER TRANSCRIPTION FACTOR KUA1 2 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01351 Pumo-Chr4 17140415 17142699 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo4g01351 Myb_DNA-binding 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01351 - - gmx:780536 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01351 4 17140415 17142699 Pumo10g02099 10 28314674 28315012 PCT