Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01345 ATGGAACCTCCCCTCATCAACGACTCCACATTCTCCTCCGCTAACCCTTCCTTGTCCGAGATTTGGCCCTCTCATTTCCCCAACGACCACACTCCCAGGAAGAGACACCTCTCCCCCTCGAGTGACTGTGGCAGCAATAAACATGTAAAATTATCAGGACCAGGATCCCAGGATGAAAACGGTGCGTTTAAGGCGGGTGAAGTGGATGCAACTTCGGTAGCCGGTAACAAGTTACCTGACCAAACTGCGAAACCTAGTTCTTCCGAGCAGCCACCTAAGCAAGACTACATACACGTGCGAGCCAGAAGGGGCCAAGCCACCGATAGCCACAGTCTCGCTGAGAGAGCTAGGAGAGAAAAAATCAGTGATAGGATGAAAATTCTTCAAGATTTAGTCCCCGGCTGCAACAAGGTAATTGGTAAAGCACTTGTGCTGGATGAGATAATTAATTATATTCAGTCACTGCAGCGTCAGGTTGAGTTCCTTTCCATGAAGCTTGAGACAGTTAATTCGAGATTGAGCATGAGCCCTACTATTGAATGTTTTCCTTCAAAAGAAGTAAGTGTATTGACGTAA 576 0.4722 MEPPLINDSTFSSANPSLSEIWPSHFPNDHTPRKRHLSPSSDCGSNKHVKLSGPGSQDENGAFKAGEVDATSVAGNKLPDQTAKPSSSEQPPKQDYIHVRARRGQATDSHSLAERARREKISDRMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLETVNSRLSMSPTIECFPSKEVSVLT 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01345 191 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 48 186 IPR024097 GO:0006355
Pumo4g01345 191 CDD bHLH_AtBPE_like 95 174 - -
Pumo4g01345 191 FunFam Basic helix-loop-helix transcription factor 102 174 - -
Pumo4g01345 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 174 IPR036638 GO:0046983
Pumo4g01345 191 Pfam Helix-loop-helix DNA-binding domain 109 156 IPR011598 GO:0046983
Pumo4g01345 191 Coils Coil 152 172 - -
Pumo4g01345 191 MobiDBLite consensus disorder prediction 95 112 - -
Pumo4g01345 191 MobiDBLite consensus disorder prediction 1 24 - -
Pumo4g01345 191 Gene3D - 102 178 IPR036638 GO:0046983
Pumo4g01345 191 MobiDBLite consensus disorder prediction 27 41 - -
Pumo4g01345 191 SMART finulus 111 161 IPR011598 GO:0046983
Pumo4g01345 191 MobiDBLite consensus disorder prediction 1 112 - -
Pumo4g01345 191 MobiDBLite consensus disorder prediction 75 93 - -
Pumo4g01345 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 155 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01345 Pumo-Chr4 17087126 17090853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01345 1 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 48.583 1.26e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g01345 HLH 5.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01345 - - gmx:100799646 350.903