Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01340 ATGCCCAACGGATCCCCTCCTCCGGTCACCGGCGAACGATCCTCGCCGGAACCCAATCCTCCGAACCATGTCTCCGATTCGAAGGAGGAAACCGCCGCAGCTCCTCCGCCCACCACCAGGAGCACCCGTCCCTCCCGCGCGTGCACCCTGCGCGCCGCCTCTCGCTTCCATTCCTCGCCTGCGAAGAAGGAGGATTCGCCACCGCCGCCGCCGTCGCAATGCAGCAAGATCGTGACTCCGCTGGTGGAGCCGCCGTCGCCGTCGCAGTTGCTGCGGTGGAGCCTGCGGTCGATGTGGGAGTTCGCTTCCGTGCTGAATTTTTTGCATCTGTTTAGGCCTCTTTTGAATATCTCGCGGGAATTCTCTGCAGAAGAGTTCGAGACAGCTCTTCTTACCCCCAACGATACTTTGTTTCATATACATATGCCTTTGCTAAAGGCAATCCCTCCTATTACACGAATGGCACTCACACGCGATACTTGGATAACCGTATTGTGCAGGAAACTGAGAGATTGGTGGCACTGGGTTGCCGATGGGGATCTTCCAATTGTTGCTTCACATGGGGCGGAGATTGAAGTATATAAATCACTTGATCCAGGGGTCCGTGTTGTCATCTTAAAAGCATTATGTGACATTCGTGTTGAGCAAGAAGATATCCGAAGTTATATTGACAACTCAATTAAACATGGTGTTCAACTTTCAACATTCCGTAAAGAGCGCATTGGAGGTGATTCACATGGAATTTCTTATTGGTATGAAGATGACCCCATTATTGGTCATAGGTTGTATCGAGAAATAAGGAAAACTGAAGTGGTTCAAATGAAGAAAGGGAAAGCAAGAGGTTCCCAGGTTCTTTCTAATACATCATACCAGTGGGAAGCAGTTGCTACCAATTTTGATGAATTTCAAGATGTTTCTGAGAAGCTTTTCTCAAGTAAAAACAGAACAGAGGCTTCTGTGGGGAAAAAGCTGAAGATAGACATGCTTCCTGAAATTGAGAAAGTTCATAAGAAAAAGGAGAAGTTGCTGAAAAAGCAACACAGACAAGCTCTTCTGCTTGATAATAATTACTTGGTTGTTGACGGGCTCGGTCCTGGGCGTTCTCTTCGTGACAGGAAACCTGTTACCTACACTTTTGATGATTATGATCGGTCAATCAATGAGGCAATTAAAGTAACCAAGCAGAAACAGCCATCTCCAGAACGTATGCCCAGGAGAGAATTGGTAGCAAAACCTGAAGCTTTGACTAATGGTAAATATGGTCCTCCGCATGCCACACAAGATCGGAATTTTGGTATACCATCTCCAGAATCATCTGACTCTGATGATGACAAAGAAGATAATGAAACTGACAACTTGGATCGAGGCAATCGTCGAAGACGGAGACCTACACGATATTCAGAAAGAGAGTTTGTTGAAGCAGTATCAGATAATGAGGCAGGCTTCGACAGTGATGATGATATTGTTGGAGAAGCCGTATATGATGAAGAATATCTCAAGAAACGCAAGCAGAAAAGGATATCTTCTAGTAGCTCTGAAGGAGATGAAGAATATCAGTGGGACGAATACAATGTTGAAGATGATGAAGAAGAAGATGATGATGATGATGATTCCTTGAGCATCAGTGAGGATAGTGACAAACCCCGTAAGGTCAAACAGTTGCCAGGCCGTACTAGGAGAGAAACCAAAGTCAGGTCTGTGGGTGAGATACAATCAGGTCTAAGACGCAGCAAGAGGGCAACTAAAAATCGTATAAATTACCGACAATATGAGGCATCAGAATCAGAAACAGAGTTTATCAAATCTGAAAAGTCTAATACATCAGATGATCACTCTGATCCCAGTGAGAATGGTGAATACATGATGGAAAGTGAAGATTCAGATGGCAGTGATAATGAAGAACAAGAAATGAAAGTAGATGAGCCTGTTACTTATCCTGCAGTAGAAGAGAATGAACAAAACCAGCCTCCTGAAAAATTAAGTAGTCCTGGTCAGGAGGAAGTTGAGAGCAGCACAGGAAAGAGACGCTTCCTTGATTTGAATGAGCTTGCCCCTAGCACTGGTTTTGATGATGGTCCAAACACAATAATGAAAGATGAAGACAATGATTACTGA 2115 0.4496 MPNGSPPPVTGERSSPEPNPPNHVSDSKEETAAAPPPTTRSTRPSRACTLRAASRFHSSPAKKEDSPPPPPSQCSKIVTPLVEPPSPSQLLRWSLRSMWEFASVLNFLHLFRPLLNISREFSAEEFETALLTPNDTLFHIHMPLLKAIPPITRMALTRDTWITVLCRKLRDWWHWVADGDLPIVASHGAEIEVYKSLDPGVRVVILKALCDIRVEQEDIRSYIDNSIKHGVQLSTFRKERIGGDSHGISYWYEDDPIIGHRLYREIRKTEVVQMKKGKARGSQVLSNTSYQWEAVATNFDEFQDVSEKLFSSKNRTEASVGKKLKIDMLPEIEKVHKKKEKLLKKQHRQALLLDNNYLVVDGLGPGRSLRDRKPVTYTFDDYDRSINEAIKVTKQKQPSPERMPRRELVAKPEALTNGKYGPPHATQDRNFGIPSPESSDSDDDKEDNETDNLDRGNRRRRRPTRYSEREFVEAVSDNEAGFDSDDDIVGEAVYDEEYLKKRKQKRISSSSSEGDEEYQWDEYNVEDDEEEDDDDDDSLSISEDSDKPRKVKQLPGRTRRETKVRSVGEIQSGLRRSKRATKNRINYRQYEASESETEFIKSEKSNTSDDHSDPSENGEYMMESEDSDGSDNEEQEMKVDEPVTYPAVEENEQNQPPEKLSSPGQEEVESSTGKRRFLDLNELAPSTGFDDGPNTIMKDEDNDY 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01340 704 MobiDBLite consensus disorder prediction 589 618 - -
Pumo4g01340 704 MobiDBLite consensus disorder prediction 1 15 - -
Pumo4g01340 704 MobiDBLite consensus disorder prediction 648 668 - -
Pumo4g01340 704 MobiDBLite consensus disorder prediction 1 75 - -
Pumo4g01340 704 PANTHER REMODELING AND SPACING FACTOR 1 57 699 IPR028938 GO:0006355|GO:0031213
Pumo4g01340 704 MobiDBLite consensus disorder prediction 619 635 - -
Pumo4g01340 704 MobiDBLite consensus disorder prediction 500 704 - -
Pumo4g01340 704 MobiDBLite consensus disorder prediction 411 488 - -
Pumo4g01340 704 MobiDBLite consensus disorder prediction 450 476 - -
Pumo4g01340 704 MobiDBLite consensus disorder prediction 16 48 - -
Pumo4g01340 704 MobiDBLite consensus disorder prediction 515 541 - -
Pumo4g01340 704 MobiDBLite consensus disorder prediction 542 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01340 Pumo-Chr4 17037870 17047415 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pumo4g01340 DDT 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01340 - - gmx:100795519 1201.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01340 4 17037870 17047415 Pumo4g01340 4 17037870 17047415 ECH
Pumo4g01340 4 17037870 17047415 Pumo10g02108 10 28424826 28434328 PCT