Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01336 ATGGTGATAAGAAGGGTGTCTCGTGACTCTTGCTTAGATCCTCAGAAAAAGTCATACATAATACAGAACCTACTAATGAGCCGTTGGATTATTAGGCAGCAGATCTCCTCTACAGAAGTCAATATAAAAAATGATGAACTGGAATTTCCTGGGAAGCATCCATCTTACAGGGACCCTCTCAAACTAATCTACGGTTGTAAACACTACAAGAGGAACTGTAACCTTTTTGCTCCTTGTTGCAACCAACTTCATACCTGCATACATTGCCATAACGAGGAATCAGATCATTTAATTGACAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTGATGATTCAACCAATCAGTGCCACATGCTCAACAATTTCTTGTAATTTGTCAATGGCAAAATATTACTGCAGGATCTGCAAGTTATTTGATGATGAAAGGGAAATTTACCATTGTCCTTACTGCAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGACTACTTTCACTGTATGAATTGCAATGCTTGTATGTCTCGTTCTCTCATGACACATACATGCAGGGAGAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCGGTAAAAGCCCTCCCATGTGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACCTGCTTTAAGTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAGAATTTCTGATGAGATATTTGGTCAAACTCAGCTGCAGGTTATATTATGTAATGACTGTGAAAAGAAAGGAGAGGCTCGCTTCCACTGGCTCTACCACAAATGCCCTAGTTGTGGTTCCTACAACACTAGAGTTCTATGA 909 0.3982 MVIRRVSRDSCLDPQKKSYIIQNLLMSRWIIRQQISSTEVNIKNDELEFPGKHPSYRDPLKLIYGCKHYKRNCNLFAPCCNQLHTCIHCHNEESDHLIDRKSITKMMCMKCLMIQPISATCSTISCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMTHTCREKHLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFKYTCPICSKSLGDMQVYFRMLDALLAEERISDEIFGQTQLQVILCNDCEKKGEARFHWLYHKCPSCGSYNTRVL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01336 302 ProSiteProfiles Zinc finger CHY-type profile. 59 128 IPR008913 GO:0008270
Pumo4g01336 302 Gene3D - 267 302 - -
Pumo4g01336 302 ProSiteProfiles Zinc finger RING-type profile. 194 236 IPR001841 -
Pumo4g01336 302 SUPERFAMILY Zinc hairpin stack 131 186 IPR037275 -
Pumo4g01336 302 Pfam CHY zinc finger 66 140 IPR008913 GO:0008270
Pumo4g01336 302 Pfam Zinc-ribbon 241 300 IPR039512 -
Pumo4g01336 302 FunFam Zinc finger protein-related isoform 1 189 238 - -
Pumo4g01336 302 SMART ring_2 194 235 IPR001841 -
Pumo4g01336 302 SUPERFAMILY RING/U-box 193 244 - -
Pumo4g01336 302 CDD RING-H2_Pirh2-like 193 236 - -
Pumo4g01336 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 238 IPR013083 -
Pumo4g01336 302 SUPERFAMILY CHY zinc finger-like 57 122 IPR037274 GO:0008270
Pumo4g01336 302 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 33 302 - -
Pumo4g01336 302 ProSiteProfiles Zinc finger CTCHY-type profile. 130 193 IPR017921 -
Pumo4g01336 302 Pfam Ring finger domain 192 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01336 Pumo-Chr4 16990653 16993687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01336 3 302 C2H2 Transcription Factor Family AT3G18290 61.589 3.43e-128 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01336 K16276 - gmx:100802706 632.098