Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01335 ATGACCCTTAAGGGTGGCACAACCCAAGCCTGTGCGGCATGCAAACACCAAAGAAGAAAGTGCACTTCTGAATGCGTTCTTGCACCTTACTTCCCCGCAGACCAACCCAAGGTGTTTCTAAACGTCCACAAGCTATTCGGAGTGAGCAACATCGTAAAGATATTGAAGATATTGGAGCCTAGTCAGAAGAAAATAGCAATGGACTCTATAATTATTCAAGCAAATTACAGGGATAAGTATCCTGTACATGGCTGTTGGGAAGAAATTTGTAGGCTACAATACCAGATATGGCTCGCGGAAGAAGAGCTTCACGCAGTTTATCAACAGCTTGAAATATGCCGGCAACAGCAACAGCATCACCAAGGTCCTTCCATGCCCGATGATGTGACTTCGCAATTAGAATTGGGCATGGCACCATGTACTAATAATGCACTCCCACTGTTTAATCATCATACTCCACAGCCACAACACACTTACAACAACAATGTGGCTGCTTTGTCTGTGTCACAGCAACATTCTTACTCCAACAGCAACAGCCTGGATTATAATTCCCTCTACTTGGATTCCAAGGATAATGGCACAAATCCTTTATGGGTTCAGTACCCCTATGCAAATAACAATAGCAATTCTGTGGGAATGCAAACTCAAATGGTTTCCTCACAGCCACTAGCCATCCAACAAAATGTTGATGATTATGATGAGATGCCTCCAATTTTTGATTCAGTTGATGATAGGCAATCATACATTTATTCCAAGGAGGCTTATGAGTCAAGTTCAGAAGAATCACTGAAAGACATGAGTAAGTGCACTGAGCATGTTTCTGAGAATGAATTGAAGAGTGCTGCTGCGTGCTTTAGCCTTACCAGTGTCAACTGA 876 0.4281 MTLKGGTTQACAACKHQRRKCTSECVLAPYFPADQPKVFLNVHKLFGVSNIVKILKILEPSQKKIAMDSIIIQANYRDKYPVHGCWEEICRLQYQIWLAEEELHAVYQQLEICRQQQQHHQGPSMPDDVTSQLELGMAPCTNNALPLFNHHTPQPQHTYNNNVAALSVSQQHSYSNSNSLDYNSLYLDSKDNGTNPLWVQYPYANNNSNSVGMQTQMVSSQPLAIQQNVDDYDEMPPIFDSVDDRQSYIYSKEAYESSSEESLKDMSKCTEHVSENELKSAAACFSLTSVN 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01335 291 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 158 - -
Pumo4g01335 291 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Pumo4g01335 291 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01335 Pumo-Chr4 16960916 16962429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01335 1 254 AS2 family AT3G47870 40.066 1.90e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo4g01335 LOB 5.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01335 - - lang:109357116 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01335 4 16960916 16962429 Pumo4g01335 4 16960916 16962429 ECH