LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g01334	ATGGGGCACAAGAAGCGAAACCCTGCGCCGCGCTCGAAACAATCCTCGGCGGCTTCTCCGGCGGCGCAATCCGGCGTCGGCGGAGCCGCCAACGGTGCCACCTCGCCGGACGCTGACGCGTGCAATGTCTCCGATCACAATCCGCATAACCCTAGGAAGATCGAATTGGCTCCGCCCCAATCCGAGGGTTCCGATTACTCCACAATCAAGCTCGAATGCGAGCGCGCCCTCACCACGCTCCGCCGCGGGAACCACACCAAGGCAATGAAGCTGCTGCGGGAGATTTGCGCCAGAGAGGAGGGCTCGCCTCACTCCGCGTTCGTCTACCGAGTTCACAGCCTCATGTGCTTCAAAACGGCGACGGTTATCACCGACCCGAGCTCGAAGCAGCGGCATTTGAAGAACGCGCTCGAGTCGGTGCGGCGCGCCGTGGAGCTCATGCCGAATTCCGTCGAGTACGCGCATTTCCGCGCCACGGTGATGTTGGAGGCGGCGAGTGAGGGGAAGGATTACGAGGAGGTGGTGCACGAGTGCGAGAGGGGGCTCGCCATTGAGAACCCTAGTGATCCTGCGAAGGAGACATTGCAGGATGAGAGCGAGCAGAAAGCATCAAGTCCTGAGGAGAGGATAGCGCACGTGCAGAATGAGTTGAGGCAGCTTATTCAGAAGTCAAATATAGCTTCGTTGTCGTCTTGGATGAAGAATTTGAGTAATGGGGAGGAGAGGTTTCGGTTGATTCCGATAAGGAGGACTCCCGAGGATCCCATGGAGGTGAGGTTGGTTCAAACTAGAAGGCCTAATGAGATCAAGAAGGTGACCAAGACACCTGAGGAGAGGAGAAAGGAAATTGAAGTTCGAGTGGCTGCTGCTAGGCTGATACAGAAAAATTCAGAGTCGCCGCAATCGGTGAACGAAGGAGATAGGGATGACAGGCCGTTGGATTCATCTGCAGGATCTGGTCAGAGGATTGGTGATAGGAGGAGGCATGGAAATGCGAGGAAGAATGGCTTTCCAGCTGAGAGGATGAAGTGGGTGCACACATATTGGAATTCGGTTAGTATGGATATGAAGAAGGACTTTCTTAGGGTTAAAATTTGTGATCTTAAGTCGCACTATGGGTCTTCAAAGGATACTTTGCCGAATGATATCTTGTCAGAAGCTTTGTCTTATGCTGAGGCCAATAAAACATGGAAATTCTGGCCTTGCTGCAACTGTGAAGAGAAACATTCCAACCCGGATTCTCACAGGCATCATGTTGTGCAGGAACACATGGGGAGTCTTTCGCCACAAATGCAGAGACTTCTGCCCCAAAATGTTGATAGTGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCTCTGGATGTCCTAGCTGCAGTTAGAATGCTTGATAATAAAGCAAAGTTCAAAAGTTCATCACTTCCTGAGGATTTGTACTTGGATCATCATACTCTGGAGGACTATAATGATTGTTTTAAAGATGCAAGCAGCTCTTACATTGAGAAGGAAAGTTCAGGGGACAGTCTTCGTAATTGTTCGGTAGAATGCAACAACCATTGTAAAATTATAGAAAATGATGTAAGAGAAGGTGTTGAAGACCAACTATCTATTGCTAATCCCATTATTGACTGTTGGCCGGTATCTGATGACCCTGAGCGTGCAAAACTTCTGGGGAAAATTCATGCCATTTTTGAGACTCTTATTAGGCACAAATGTCTTGCCGCTAGTCATCTTAACAAGGTCATACAGTTTACTATGGGTGAGATACAGGGTCTTGCTGCTGGTTCTCAACTTCTAAATCATGGCGTGGACCAAACACCAATGTGCATATGCTTTCTAGGAGCTTCACAGCTTAAGACAATTTTCCAATTTCTGCAGGAAATATCTCATGCTTGCGGGTTGGCCAGAAATGCTGATAAAGGTAGTAGTCCCACAAATGATTTGCTCAATATCAGTCAAGGTCCCGAGATTAAAGACAAGATTGTACTTGATGGAGATGCATCATGCCTCCTACTGGATGAGTGTTTACTGCAAACACAAGTCACTGCTGGTACAGTTCAGGGGGCTGTCTTTGATGATGTGACCACCCCAAGCTCTCCTGATGGAATTTCATGCTATAACGATGCTTTGCTATCCTGGATATTTTCAAGTTCATCTATTGGGGATCAGTTGACATCATGGCTGCGGACCAGAGAAGATAAACTAAATAAAGGAAAGGAAATTGTCCAGTTGCTTGAGAAGGAGTTTTATCATCTACAGGGCCTATGTGAGAAGAAGGGTGAGCGTATAAGTTATGAGGAAGCTCTGCAAACAGTAGAGGATCTTTGTCTTGTAGAAGGTAAGAAGAGGGAAACTGTTGGTGAATTTGTCCAGCGAAGCTATGAATCTGTCTTAAGAAAGCGAAGAGAAGAGCTCATTGAGAGTGAGAATGATATGATGTATGTCAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTTTTGCAAGAAGCAGAAGCAAGGAATGTTAATCAATTCGGCTATGAGGAAACTTATGCTGGTGTGACTTCTCAGTTATGTGACTTGGAATCTGGTGAAGAAGATGAATGGAGAATGAAGGATTACTTGCATCAAATGGATGGTTGTATAGAAAATGCTATTCAGAAACTGAAAGAGCATTTATCTATAGAGCTTAGCAAAATTGATGCCCGAATAATTAGAAGTGTTACAGAGATGCAGCAACTGGAATTCAAGCTTGGGCCTATTTCTGCTAACGATTATCGAGCAATATTAGTGCCTCTAGTGAAGTCGTACCTAAGGGCTCTTTTGGAAGATTTGGCTGAGAAGGATGCAAGAGAGAAGTCTGATGCTGTAAGTGAAGCACTTTTGGCTGAACTTGCTCATGATTCCAAGAAGGCTGTTAAGGGGGGAAGTGAGAGCACAAGACATGTCGAGAAAACAAAAGATAAGAAGAAGAATAAAGATCACAGAAAAGCAAGAGATTTGAAGGCCACAAGTGGTCATGCGCAGTTCTCACTTGGATCAACAACTCCTGAGTCAGTATATGTTTCATTCTTTTTTCTTGATTTTTATTTTTTATTGTGTAATCTTCTACAGACACAGACACTGTCACTCTTCTTAAAAATGTTTTTGATGTGCTTCTGTTACAGTTCCAATCTAGTTGCACCTGAAAGTGACTTCCCAGATCATGAGGTTGTTTCTATGAACGATGATGACTTGGAACAACTTGAAGAGGAATTTAGACATAAGATTGAGTTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAATTTCAACGAAGGATAGAAAATGAAGCCAAACAGAAGCACCTTGCAGAGCAACAAAAAAAATCATCTGGGTTATACTTGGAAGGAGTGGTAGACAAACTTCAAGACTCTCAAACAAAGGCGGATGCTGATCCACCAGATGCACATGAGCATGTTGGAGTACCTGTGCAGGACCAACTGGTAAAGGAGAATGGATCCCGAAGCAATGTGGATGGTGTGCTTACACCCACAGCAAATGGTTCCCTTGTTAATTATTCGCATCAGTCAAAAGTTAAACAATCAGGTTTGCCTAATGGAGTTGTTCCAGAGAATGGTCTAGATCGGCGTGCAGGAAAAAAACATAAACGGAAAAATTCTTCCAGACAAGTTGATGGAAAGTTTGAATCTGTCTCATCGGGAAATGAGAATATTGAGGATACACACACTGATCATCACCTGAGAGAGCAATTCAAATTTAATAACAATCAAGATGTTAATAATGTGTGGGAAAACAATGGACCAAAGGTGATGAGAGAGTTACAAGTAGAAGATGCGGAGGAGGAAAGATTCCAAGCTGATCTTAAAATGGCTGTACGCCAAAGCCTGGACACATATCAAGCTCGTGGAAATTTGCATTCAGTTTCCAGTTTAAGAATGTCACAGAGAGCTTCTTCACAGGAAGATAGTGTGGATTGTCTGCCTGTGGAAGACTCAACTGATAATGTGAATGGGGCTACGTTGCTTGGTACTGGACTGAAGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAATCATTGTGGCATTTAAGACGCTTTCGGGTGGAATTTCTTGGCAGATCAAGATCAGAGCATGATCATGTGGGTAGTCCTTGCGTTGTCTGTGCATTGTATGAAATCTTTACTGCACTGGACACTGCATCAAAGGATTCAAGGAGAGAAGCAGTTGCACCTACATCCCTGCGGATAGCTCTAAGCAACCTGTATCCTCACAGTAATTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAGGTACTAGCAGTGATATTTGACTGCCTTCATCGATCATTTACTCGTCGTTCAAGTGTTTCTGATGCAGAATCAGCTGAAAGCAACTGCATGGGATCTTGGGATTGTGCAAATGGTAGTTGTATAGCACATTCACTTTTTGGAATGAACATTTTTGAACAAATGAACTGCTATCACTGTCGTCTTGAATCCAGACATATGAAATATACTTCCTTCTTTCACAATATAAATGCCAGTGCCCTCCGGACAATGAAGGCAATGTTTGCTGAAAGTTCCTTTGATAAGCTTTTGAATCTTGTGGAGATGAACCATCAGTTGGCTTGTGATCTTGAAGCTGGTGGCTGTGGCAAGCTCAACCACATCCATCACTTACTTTCAACTCCACCCCATGTTTTTATGACAGTCCTAGGTTGGCAAAATACATGTGAGAGTGCCGATGATATAATAGAGACTTTGGCAGCCCTGAGCACCAAGATAGATATCAGTGTCCTTTATCGTGGTTTAGATCCTAAATGCATTCATAACTTGGTGTCAGTGGTTTGCTACTATGGCCAGCATTATCATTGCTTTGCTTATAGCCATGACCATGAACAGTGGATTATGTATGATGACAAGACTGTCAAGGTAATTGGTGGATGGGCGGATGTTCTTACAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAG	5025	0.4402	MGHKKRNPAPRSKQSSAASPAAQSGVGGAANGATSPDADACNVSDHNPHNPRKIELAPPQSEGSDYSTIKLECERALTTLRRGNHTKAMKLLREICAREEGSPHSAFVYRVHSLMCFKTATVITDPSSKQRHLKNALESVRRAVELMPNSVEYAHFRATVMLEAASEGKDYEEVVHECERGLAIENPSDPAKETLQDESEQKASSPEERIAHVQNELRQLIQKSNIASLSSWMKNLSNGEERFRLIPIRRTPEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLIQKNSESPQSVNEGDRDDRPLDSSAGSGQRIGDRRRHGNARKNGFPAERMKWVHTYWNSVSMDMKKDFLRVKICDLKSHYGSSKDTLPNDILSEALSYAEANKTWKFWPCCNCEEKHSNPDSHRHHVVQEHMGSLSPQMQRLLPQNVDSEWIEMILNCSWKPLDVLAAVRMLDNKAKFKSSSLPEDLYLDHHTLEDYNDCFKDASSSYIEKESSGDSLRNCSVECNNHCKIIENDVREGVEDQLSIANPIIDCWPVSDDPERAKLLGKIHAIFETLIRHKCLAASHLNKVIQFTMGEIQGLAAGSQLLNHGVDQTPMCICFLGASQLKTIFQFLQEISHACGLARNADKGSSPTNDLLNISQGPEIKDKIVLDGDASCLLLDECLLQTQVTAGTVQGAVFDDVTTPSSPDGISCYNDALLSWIFSSSSIGDQLTSWLRTREDKLNKGKEIVQLLEKEFYHLQGLCEKKGERISYEEALQTVEDLCLVEGKKRETVGEFVQRSYESVLRKRREELIESENDMMYVSNRFELDAISNVLQEAEARNVNQFGYEETYAGVTSQLCDLESGEEDEWRMKDYLHQMDGCIENAIQKLKEHLSIELSKIDARIIRSVTEMQQLEFKLGPISANDYRAILVPLVKSYLRALLEDLAEKDAREKSDAVSEALLAELAHDSKKAVKGGSESTRHVEKTKDKKKNKDHRKARDLKATSGHAQFSLGSTTPESVYVSFFFLDFYFLLCNLLQTQTLSLFLKMFLMCFCYSSNLVAPESDFPDHEVVSMNDDDLEQLEEEFRHKIELEEEEKKLEETLEFQRRIENEAKQKHLAEQQKKSSGLYLEGVVDKLQDSQTKADADPPDAHEHVGVPVQDQLVKENGSRSNVDGVLTPTANGSLVNYSHQSKVKQSGLPNGVVPENGLDRRAGKKHKRKNSSRQVDGKFESVSSGNENIEDTHTDHHLREQFKFNNNQDVNNVWENNGPKVMRELQVEDAEEERFQADLKMAVRQSLDTYQARGNLHSVSSLRMSQRASSQEDSVDCLPVEDSTDNVNGATLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRVEFLGRSRSEHDHVGSPCVVCALYEIFTALDTASKDSRREAVAPTSLRIALSNLYPHSNFFQEAQMNDASEVLAVIFDCLHRSFTRRSSVSDAESAESNCMGSWDCANGSCIAHSLFGMNIFEQMNCYHCRLESRHMKYTSFFHNINASALRTMKAMFAESSFDKLLNLVEMNHQLACDLEAGGCGKLNHIHHLLSTPPHVFMTVLGWQNTCESADDIIETLAALSTKIDISVLYRGLDPKCIHNLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKVIGGWADVLTMCERGHLQPQVLFFEAVN	1674

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g01334	1674	MobiDBLite	consensus disorder prediction	191	208	-	-
	Pumo4g01334	1674	MobiDBLite	consensus disorder prediction	302	335	-	-
	Pumo4g01334	1674	Gene3D	Cysteine proteinases	1328	1672	-	-
	Pumo4g01334	1674	MobiDBLite	consensus disorder prediction	291	335	-	-
	Pumo4g01334	1674	CDD	Peptidase_C19	1432	1671	-	-
	Pumo4g01334	1674	ProSiteProfiles	Ubiquitin specific protease (USP) domain profile.	1341	1673	IPR028889	-
	Pumo4g01334	1674	MobiDBLite	consensus disorder prediction	967	982	-	-
	Pumo4g01334	1674	MobiDBLite	consensus disorder prediction	183	208	-	-
	Pumo4g01334	1674	Pfam	Ubiquitin carboxyl-terminal hydrolase	1342	1650	IPR001394	GO:0004843\|GO:0016579
	Pumo4g01334	1674	MobiDBLite	consensus disorder prediction	967	997	-	-
	Pumo4g01334	1674	PANTHER	UBIQUITIN SPECIFIC PROTEINASE	1	1673	-	-
	Pumo4g01334	1674	Coils	Coil	1074	1111	-	-
	Pumo4g01334	1674	Pfam	Protein of unknown function (DUF629)	345	879	IPR006865	-
	Pumo4g01334	1674	MobiDBLite	consensus disorder prediction	1	65	-	-
	Pumo4g01334	1674	MobiDBLite	consensus disorder prediction	1185	1236	-	-
	Pumo4g01334	1674	Gene3D	Tetratricopeptide repeat domain	52	220	IPR011990	GO:0005515
	Pumo4g01334	1674	Pfam	Protein of unknown function (DUF627)	75	186	IPR006866	-
	Pumo4g01334	1674	SUPERFAMILY	Cysteine proteinases	1341	1671	IPR038765	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g01334	65	1671	C2H2 Transcription Factor Family	AT3G47890	55.064	0.0	1684

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g01334	-		-	gmx:100799759	3022.65

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo4g01334	4	16946878	16956566	Pumo4g01334	4	16946878	16956566	ECH