Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01325 ATGCAAATGGGGACTGTAGCATGGATTTCCTTGGTGACTATGATAACAGTTTTCTGCCCTTCCTCTCTTGCTCTCACCCAGGATGGTCTGGCGTTGTTGGAAATCAAAAGTACTTTGAATGATACTAAGAATGTTCTGAGCAACTGGCAAGAGTTTGATGAGTCTCCTTGTGCATGGACTGGTATCTCTTGTCATCCTGGTGATGAACACAGAGTTCGCTCAATAAATCTGCCATACATGCAACTTGGAGGCATTATATCACCCAGCATTGGTAAACTTAGTAGACTACAGAGATTGGCATTTCATCAGAACAGCTTGCACGGAACCATTCCTAATGAACTTACCAATTGTACTGAGCTAAGAGCACTGTACCTGAGGGGTAATTATTTCCAAGGAGGCATACCCTCAAATATTGGAAACCTTTCATATTTAAATATACTGGATTTATCAAGCAACTCATTAAAAGGTGCTATACCTTCCTCTATTGGCCGTCTCTCACATTTGCAAATTCTGAACTTGTCTACCAATTTCTTTTCCGGAGAAATTCCTGACATTGGAGTATTAAGCACCTTTGACAAGAACTCGTTTATTGGCAATTTAGATCTTTGTGGGAGGCAAGTCCAAAAGCCATGTCGGACATCACTTGGTTTCCCTGTGGTGCTACCACATGCTGAAAGCGATGAAGCTGCAGTCCCTAAAAAAAGAACTTCACATTACATGAAGGGGGTGCTAATTGGTGCAATGGCAACTATGGGTCTCGCACTTGTCATAATCCTTTCATTCCTCTGGACTCGTTTGTTATCAAAGAAGGAACAAGCAGCAAAGAGATACACAGAAGTCAAGAAACAAGTTGATCCAGAAGCACGCACAAAACTTATTACCTTCCATGGTGATCTGCCCTACACATCATCTGAGATCATAGAGAAGCTGGAGTCTCTTGATGAAGAGGATATAGTAGGATCAGGAGGATTTGGTACTGTTTATCGAAAGGTGATGAATGATTGTGGTACATTTGCTGTTAAACGGATTGATCGAAGTTGTGAAGGGTCTGATCAAGTGTTTGAAAGGGAACTAGAGATCTTGGGGAGCATCAACCACATAAATTTAGTAAATCTGCGTGGTTACTGCAGGCTCCCTTCTTCAAGGCTCCTTATCTATGATTATTTGGCCTTAGGCAGCTTAGATGATCTCTTGCATGAAAATACTCAACAAAGACGACTACTGAATTGGAGTGATCGCCTAAAGATAGCTCTTGGTTCTGCCCGGGGTTTGGCATACTTGCACCATGAATGCAGCCCAAAAATTGTTCATTGTAACATAAAATCCAGCAACATCCTTCTTGATGAAAACATGGAGCCCCATATATCTGATTTTGGTCTTGCAAAGCTTTTGGTTGATGAAGAGGCCCATGTTACCACAGTGGTTGCCGGCACATTTGGTTATCTGGCACCAGAGTATCTACAAAGTGGGAGAGCAACTGAGCAGTCAGATGTATATAGCTTTGGAGTTCTATTGCTGGAACTTGTAACTGGAAAGAGGCCAACAGATCCTTCCTTTGTAAAAAGAGGTTTAAATGTTGTTGGTTGGGTAAGCTTTTAA 1599 0.4184 MQMGTVAWISLVTMITVFCPSSLALTQDGLALLEIKSTLNDTKNVLSNWQEFDESPCAWTGISCHPGDEHRVRSINLPYMQLGGIISPSIGKLSRLQRLAFHQNSLHGTIPNELTNCTELRALYLRGNYFQGGIPSNIGNLSYLNILDLSSNSLKGAIPSSIGRLSHLQILNLSTNFFSGEIPDIGVLSTFDKNSFIGNLDLCGRQVQKPCRTSLGFPVVLPHAESDEAAVPKKRTSHYMKGVLIGAMATMGLALVIILSFLWTRLLSKKEQAAKRYTEVKKQVDPEARTKLITFHGDLPYTSSEIIEKLESLDEEDIVGSGGFGTVYRKVMNDCGTFAVKRIDRSCEGSDQVFERELEILGSINHINLVNLRGYCRLPSSRLLIYDYLALGSLDDLLHENTQQRRLLNWSDRLKIALGSARGLAYLHHECSPKIVHCNIKSSNILLDENMEPHISDFGLAKLLVDEEAHVTTVVAGTFGYLAPEYLQSGRATEQSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWVSF 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01325 532 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Pumo4g01325 532 Pfam Protein kinase domain 315 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01325 532 Gene3D Ribonuclease Inhibitor 25 213 IPR032675 -
Pumo4g01325 532 Gene3D Phosphorylase Kinase; domain 1 271 388 - -
Pumo4g01325 532 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 73 531 - -
Pumo4g01325 532 Gene3D Transferase(Phosphotransferase) domain 1 389 532 - -
Pumo4g01325 532 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 389 532 - -
Pumo4g01325 532 SUPERFAMILY Protein kinase-like (PK-like) 296 518 IPR011009 -
Pumo4g01325 532 ProSiteProfiles Protein kinase domain profile. 313 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01325 532 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 188 - -
Pumo4g01325 532 SUPERFAMILY L domain-like 25 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01325 Pumo-Chr4 16843980 16849523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01325 7 532 Receptor kinase-like Gene Family AT2G35620 49.240 2.05e-171 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Pumo4g01325 Pkinase 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01325 - - gmx:100803920 1011.52