Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01323 ATGGGGATGACTGCATGGACGAGCTACTTTCATCAACCAGAGAAGAAGCGTCGTCTCTCTGTGAGCCAGGTTCAGTTTCTGGAGAAGAGTTTCGAGGAAGAGAACAAGCTCGAACCCGAGAGGAAAACCAAGCTTGCAAAGGACCTTGGTTTGCAGCCACGACAAGTTGCTATTTGGTTCCAGAACCGTCGAGCTCGCTGGAAGACCAAACAGCTGGAGAAGGACTATGACACTCTGCATGCAAGCTATGAGAGTCTTAAGTCCAACTATGACAACCTCCTCAAGGAGAAAGACAAGTTAAAAGCTGAGGTGGCGAGCCTCACTGAGAAGGTGCTTGCAAGAGGGAAACAAGAGGGGCACTTGAAGCAGCAGGGTGAAAGTGAAGCAAAAGGATTGCATTTGCAGGAACAGGAACAACCACCCCAGAGGCCTTTACTGGAATCAGTTTCGGAGGGTGAAGGATCCAAAGTCTCTTCTGTTGTTGGGGGCTGTAAACAGGAAGATATCAGTTCAGCCAGAAGTGACATTTTGGATTCAGATAGTCCACATTACACCGATGGAGTTCACTCTGCGCTGCTAGAGCATGGTGATTCTTCTTATGTCTTTGAGCCTGATCAATCAGACCAGTCACAAGAAGAAGAAGATAACCTCAGCAAGAGTCTCTACCCTTCGTACCTCTTTCCCAAACTTGAAGATGTGGATTACTCCGACCCCCCTGAAAATTCTTGTAATTTTGGATTTCCGGAGGAAGATCACGATCACGATCACGCCCTTTGGACCTGGGCATACTAA 792 0.4785 MGMTAWTSYFHQPEKKRRLSVSQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLHASYESLKSNYDNLLKEKDKLKAEVASLTEKVLARGKQEGHLKQQGESEAKGLHLQEQEQPPQRPLLESVSEGEGSKVSSVVGGCKQEDISSARSDILDSDSPHYTDGVHSALLEHGDSSYVFEPDQSDQSQEEEDNLSKSLYPSYLFPKLEDVDYSDPPENSCNFGFPEEDHDHDHALWTWAY 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01323 263 PRINTS Lambda-repressor HTH signature 41 50 IPR000047 GO:0003677
Pumo4g01323 263 PRINTS Lambda-repressor HTH signature 50 66 IPR000047 GO:0003677
Pumo4g01323 263 Pfam Homeodomain 15 68 IPR001356 GO:0003677
Pumo4g01323 263 SUPERFAMILY Homeodomain-like 13 81 IPR009057 -
Pumo4g01323 263 CDD homeodomain 15 71 IPR001356 GO:0003677
Pumo4g01323 263 Pfam Homeobox associated leucine zipper 70 111 IPR003106 GO:0006355|GO:0043565
Pumo4g01323 263 MobiDBLite consensus disorder prediction 115 133 - -
Pumo4g01323 263 MobiDBLite consensus disorder prediction 200 221 - -
Pumo4g01323 263 Coils Coil 69 110 - -
Pumo4g01323 263 SMART HOX_1 13 74 IPR001356 GO:0003677
Pumo4g01323 263 Gene3D - 65 113 - -
Pumo4g01323 263 Gene3D - 18 64 - -
Pumo4g01323 263 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 167 IPR045224 GO:0003700
Pumo4g01323 263 ProSitePatterns 'Homeobox' domain signature. 45 68 IPR017970 GO:0000981|GO:0006355
Pumo4g01323 263 ProSiteProfiles 'Homeobox' domain profile. 10 70 IPR001356 GO:0003677
Pumo4g01323 263 FunFam Homeobox-leucine zipper protein HAT5 8 72 - -
Pumo4g01323 263 MobiDBLite consensus disorder prediction 115 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01323 Pumo-Chr4 16828855 16830862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01323 13 118 Homeobox Transcription Factor Family AT3G01470 71.698 1.80e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo4g01323 Homeodomain 9.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01323 - - gmx:100799054 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01323 4 16828855 16830862 Pumo4g01323 4 16828855 16830862 ECH