Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01312 ATGGAGCTTGCTTCGGAGAGATCTGGTGACGGAGGTAGTGGACTCAAGGAAGAAAAGAGTAGTGTTGGTGATGATGATGGTCGTCATAAACAAGAGATTATTGTCGAGGAACCACCTGTGGCTAATACCGAAAGATCCATACTGGAGGCTGGACCTAGCACATCCCCAAACAAAAAGGAAGAGGTTGATGATCAGCTTGAGACTGCTAAAGCTGAAATGGGTGTGGTGAGAGAAGAAAATGAACGGCTAAAGATGTGTTTGAACAAGATAATGAATGAATATCGGACACTAGAAATGCAATTTCAAGATATACTTAAGCAAGGGACAAAAAAGATTAATGATGATAACCATGAAGAAATATTAGAGGAATCGGATCTTGTTTCCCTCAGTCTTGGAAGAGTTCCGAGCAATATTCCAAGAAGTGACGAGAAAATGAAGGTTTCTAAAGCATTGAAGGATGATGAAGGGTTTAACGGAGAGTTGACTCTTGGACTAGAGTGCAAATTTGAAACATCAAAGTCAGGAAGCACAACTGAAGCTTTGCCTAATCATCCAAGCCCAGAAAATAGTTCTGAAGTACCAAAGGAAGAAGCTGGGGAGAGTAAGGAGGCACTCAAGACAATGAGAGACACAGAGGATGAAGTTGCTCAGGAAAATCCTACGAAGAAACCTCGAGTTTGTGTTAGAGCAAGATGTGACACTCCAACAATGAATGATGGATGCCAATGGAGGAAATATGGACAAAAGATTTCAAAGGGAAACCCTTGCCCTCGAGCTTACTATCGTTGCACAATTGGACCATCATGCCCAGTAAGAAAACAGGTGCAAAGATGTGCTGATGACATGTCCATTCTAATCACCACCTACGAAGGGACCCACAACCACACTCTTCCACCTTCAGCTACTGCCATGGCATCCACAACTTCCGCAGCTGCTTCCATGCTCCTCTCTGGTTCATCAACCTCTAACTCTGGCTCAGTGCCTTCAGCAACAACCAATCTCCACGGCCTCAACTTTTATCTCTCAGATGGTTCAAAACCAAGGCAACTATACCTCTCCAACCCTGCACTATCATCTTCTCCTTCACACCCAACCATCACTCTCGACCTCACTTCACACCCAGCCTCTTCCTCTTCATCATCACCCTTTGTCAGATTCAACCAACCCAGATACCCCTCTTCCTCAAGCCTAAGCTTCAGTAGCAACGGGTTCCTCAACAATAATAACACTCAACCATATAGTAACAACAGCAACATGAACATCCTTAGTAGTGTAAACTTTGGAAGACAACAAATGGAAAATATGTACCAAACCTACATGCAAAAGAACAACAACAACAACAACACAAGTGATTCTATATCTGCAGCAACGAAAGTGATAACAGCAGACCCCACTTTTCAGTCAGCTTTGGCAGCAGCGCTTACTTCGTTTATTGGTGGAAGCACCACGCGAGGAGGTGGAGAAAGTTTAGGTTTGGGTCAGAAAATGAAGTGGGGTACTGGTGAGGTGTTTCCACCAGCGTCTAATAATCCTTCAACTTCTTCGAATAAAGTCAATGGTTGTGCATCGAGCTTCTTGAATAAAACGCCCCCCGCGAATAATACACAGACGAAAAGTTTGATGTTTCTGCCGCCCTCGTCTTTGCCCTTTTCTACCCCCAAAAGTGCATCTCCATCTCCTGCTGATAATAGCGACACCACCAATTAA 1707 0.44 MELASERSGDGGSGLKEEKSSVGDDDGRHKQEIIVEEPPVANTERSILEAGPSTSPNKKEEVDDQLETAKAEMGVVREENERLKMCLNKIMNEYRTLEMQFQDILKQGTKKINDDNHEEILEESDLVSLSLGRVPSNIPRSDEKMKVSKALKDDEGFNGELTLGLECKFETSKSGSTTEALPNHPSPENSSEVPKEEAGESKEALKTMRDTEDEVAQENPTKKPRVCVRARCDTPTMNDGCQWRKYGQKISKGNPCPRAYYRCTIGPSCPVRKQVQRCADDMSILITTYEGTHNHTLPPSATAMASTTSAAASMLLSGSSTSNSGSVPSATTNLHGLNFYLSDGSKPRQLYLSNPALSSSPSHPTITLDLTSHPASSSSSSPFVRFNQPRYPSSSSLSFSSNGFLNNNNTQPYSNNSNMNILSSVNFGRQQMENMYQTYMQKNNNNNNTSDSISAATKVITADPTFQSALAAALTSFIGGSTTRGGGESLGLGQKMKWGTGEVFPPASNNPSTSSNKVNGCASSFLNKTPPANNTQTKSLMFLPPSSLPFSTPKSASPSPADNSDTTN 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01312 568 FunFam probable WRKY transcription factor 31 222 299 - -
Pumo4g01312 568 ProSiteProfiles WRKY domain profile. 232 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g01312 568 MobiDBLite consensus disorder prediction 501 568 - -
Pumo4g01312 568 MobiDBLite consensus disorder prediction 11 35 - -
Pumo4g01312 568 MobiDBLite consensus disorder prediction 173 189 - -
Pumo4g01312 568 MobiDBLite consensus disorder prediction 173 222 - -
Pumo4g01312 568 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 54 499 IPR044810 GO:0003700
Pumo4g01312 568 MobiDBLite consensus disorder prediction 190 222 - -
Pumo4g01312 568 MobiDBLite consensus disorder prediction 354 383 - -
Pumo4g01312 568 MobiDBLite consensus disorder prediction 1 65 - -
Pumo4g01312 568 Coils Coil 59 107 - -
Pumo4g01312 568 Pfam WRKY DNA -binding domain 238 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g01312 568 Gene3D WRKY domain 222 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g01312 568 MobiDBLite consensus disorder prediction 505 568 - -
Pumo4g01312 568 SMART WRKY_cls 237 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g01312 568 SUPERFAMILY WRKY DNA-binding domain 230 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01312 Pumo-Chr4 16714385 16718366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01312 62 480 WRKY Transcription Factor Family AT1G18860 40.816 1.94e-76 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo4g01312 WRKY 3.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01312 - - gmx:100793946 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01312 4 16714385 16718366 Pumo4g01312 4 16714385 16718366 ECH