Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01307 ATGGGGAATTGTTTTGGAACTCGTTGCAAGGTTGATGACACTTCGAACTCCCACCCCAGTTCTGATGTTACCAAATCTCACCACAGAAGCACCCATTTGTTAGTTCAATCAAATCAAAACGGGTATGGATGCAGTGATGAAGGCAAACCTGAGATTCTCCCCACTCCAAGATCTGAAGGGGACATACTTTCATCCCCACATTTAAAACCCTTCACATTACATGATCTTAAGAAGGCCACTAGAAATTTCCAGCCTGATAGTCTAATTGGAGAAGGGGGATTTGGTTGTGTCTATAAGGGGTTGATTAATGATAGTAAATCCTTTGGGGCTACAATGCCTAAATCTGGAATGGTTGTAGCTGTGAAGAAGCTTAAGCCTGAAGGTTTTCAGGGGCATAAGGAGTGGCTGTCTGAAGTCAACTATCTTGGCCAACTTCGCCATCCAAATCTTGTCAAACTTATTGGATACTGTCTAGAAGGAGATAACCGCCTTCTAGTGTACGAGTACATGCCCAACAGAAGCTTGGAAGATCATATATTTCGCAAGGGCGCACAACCACTTCCTTGGGCAACAAGAGTCAAGATTGCTATTGGTGCTGCTCGAGGTCTCACCTTCCTACATGACTCTAAGCAACAAATTATATACCGTGATTTCAAGGCTTCTAATATTTTGTTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGCCCCACTGGTGATCATTCTCATGTTTCCACTCAAGTCCTGGGCACTCATGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGTTGACTTCAAGGTGTGATGTCTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGGCGCCATGCTATTGATAACACAAAATCTGGAGTGGAACATAATCTGGTAGAATGGTCAAGACCCTATTTGGGTGATAGGAGGAAGCTGTTCCGGATTATGGACACCAAGTTAGAAGGGCAATACCCACAGAGGGCAGCTTTTACAGTTGCAATTATTGCTTTACAATGTATTAGTGAGGCCAAGACAAGACCACAGATGTCTGAGGTTTTGGCTGCCTTGGAACACCTGCCAGCCATTATTAGGCATTCAGCTAGCCCATCTAGAGAAGAGAAGTCCATGCCAAGTCCCATGAGAGAGGGTCTAGGTCCTATGGTAAAATCCCCTTTGAGACATAATCATCCTCAACAAAATCCAGAGTTCTGA 1233 0.4404 MGNCFGTRCKVDDTSNSHPSSDVTKSHHRSTHLLVQSNQNGYGCSDEGKPEILPTPRSEGDILSSPHLKPFTLHDLKKATRNFQPDSLIGEGGFGCVYKGLINDSKSFGATMPKSGMVVAVKKLKPEGFQGHKEWLSEVNYLGQLRHPNLVKLIGYCLEGDNRLLVYEYMPNRSLEDHIFRKGAQPLPWATRVKIAIGAARGLTFLHDSKQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDHSHVSTQVLGTHGYAAPEYIATGRLTSRCDVYSFGVVLLELLSGRHAIDNTKSGVEHNLVEWSRPYLGDRRKLFRIMDTKLEGQYPQRAAFTVAIIALQCISEAKTRPQMSEVLAALEHLPAIIRHSASPSREEKSMPSPMREGLGPMVKSPLRHNHPQQNPEF 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01307 410 FunFam Serine/threonine-protein kinase PBS1 170 382 - -
Pumo4g01307 410 Gene3D Transferase(Phosphotransferase) domain 1 170 383 - -
Pumo4g01307 410 ProSiteProfiles Protein kinase domain profile. 83 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01307 410 Gene3D Phosphorylase Kinase; domain 1 55 169 - -
Pumo4g01307 410 SUPERFAMILY Protein kinase-like (PK-like) 60 368 IPR011009 -
Pumo4g01307 410 MobiDBLite consensus disorder prediction 12 31 - -
Pumo4g01307 410 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Pumo4g01307 410 FunFam Serine/threonine-protein kinase BIK1 53 169 - -
Pumo4g01307 410 Pfam Protein tyrosine and serine/threonine kinase 87 360 IPR001245 GO:0004672|GO:0006468
Pumo4g01307 410 CDD STKc_IRAK 89 366 - -
Pumo4g01307 410 MobiDBLite consensus disorder prediction 371 410 - -
Pumo4g01307 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Pumo4g01307 410 PANTHER OS01G0588500 PROTEIN-RELATED 26 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01307 Pumo-Chr4 16660677 16665121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01307 22 366 Glycoside Hydrolase AT3G07070 47.564 6.20e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo4g01307 PK_Tyr_Ser-Thr 4.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01307 - - gmx:100791844 726.472