Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01299 ATGGGATCAGAGAGTGTGGCTCCAATGGTTGAGACATCAAAAAACAGGTCTTCTTCTGGTAAAATGAACCAAGGGAAAGTCCCCAGGAAAATTCACAAGGCTGAAAGGGAGAAAATGAAGCGTGAACATTTGAATGAACTCTTTCTTGATCTTGCCAATGCACTTGATCTAAATGAGAACAATGGAAAGGCTTCTATACTGTGTGAAACTGCCAGGTTGCTAAAAGACTTGCTCAGTCAGATCGAGTCCCTCAAGAAAGAGAATGTTACTCTGTTGTCTGAATCTCATTATATGACCATGGAGAAAAATGAGCTGAAGGAGGAGAATTGTAGCCTAGAAACTCAAATTGAAAAACTTCAAGGTGAGATACAGGCAAGAGTGGCTCAATCTAAACCAGACCTGAATGTACCTCCCCATTTGGAACTTGAGCCACTGGAGCAGACAAATTTTCCAGGACAGAATCTCCAATTGCATACCATAGAACCTAACTTGCAGCAAGGATCTGCAGTTTTTGTTGTTCCCTTTCGTCCTGATCTTCAAGCTTCTTTTCCAGCTCCTAATGTTACCGAGGTCATGCCGAAATCTACGCCTGTTGTCAGTAAACCACATGCCAGGTATCCCACACCAGCAGATTCATGGCCATCACAACTGCTTGGAGAGCAACCAACTTCAAGTTAA 678 0.4292 MGSESVAPMVETSKNRSSSGKMNQGKVPRKIHKAEREKMKREHLNELFLDLANALDLNENNGKASILCETARLLKDLLSQIESLKKENVTLLSESHYMTMEKNELKEENCSLETQIEKLQGEIQARVAQSKPDLNVPPHLELEPLEQTNFPGQNLQLHTIEPNLQQGSAVFVVPFRPDLQASFPAPNVTEVMPKSTPVVSKPHARYPTPADSWPSQLLGEQPTSS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01299 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 77 IPR011598 GO:0046983
Pumo4g01299 225 MobiDBLite consensus disorder prediction 1 31 - -
Pumo4g01299 225 MobiDBLite consensus disorder prediction 188 225 - -
Pumo4g01299 225 Gene3D - 20 94 IPR036638 GO:0046983
Pumo4g01299 225 Coils Coil 74 94 - -
Pumo4g01299 225 Coils Coil 102 122 - -
Pumo4g01299 225 PANTHER TRANSCRIPTION FACTOR BHLH47 7 224 - -
Pumo4g01299 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 29 104 IPR036638 GO:0046983
Pumo4g01299 225 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01299 Pumo-Chr4 16572718 16575064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01299 15 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 47.788 5.17e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01299 - - gmx:100782436 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01299 4 16572718 16575064 Pumo4g01299 4 16572718 16575064 ECH