Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01296 ATGGAGGGAGGCGACGATCTCCACCACCATCACCACCACCACCGTCAGAACTTCCCATTCCAGCTCCTGGAGAAGAAAGAAGACCAAGAAACCGCGTCATGCTCCACTTCCTCCCCCTACCCTTCCCTAGCAATCTCCGCCGAACCCAGCACCTCCAATTCCAACCGATCCAACCAGCTCGCGGCGGCGCCGGAGCCCCCCAACAGCAAGAAGCCGGCGCCGAAGCGCACCTCCTCAAAGGACCGGCACACGAAGGTGGACGGGCGCGGCCGCCGCATCCGAATGCCGGCCCTCTGCGCCGCCCGCGTCTTCCAGCTCACCCGGGAGCTGGGCCACAAGTCGGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCCGCCGTGATCGCGGCCACAGGCACCGGCACCATCCCCGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGCTCCGGCTCCTCCATGTCCGTCCCCTCCCAGCTCCGGTCCTCCTACTTCAACCCCAACTTCTCCCTCCAACAACGCAGAACCCTATTCCCAAACATAGCCCTATCCTCCTCCGACAACACCACCAACACTTCCACCTCCACACTCCTCAATTTCCAATCCAACAACCTTACCACTACCATGCTGCAGGCCAAGCCGGAGCTTCGCGACGGCGTGCCGTCCTCCTTGGACTTATCAGACACAACCACAGAAGACACAAACCTTGGCCGCAAAAGAAGACCAACCGAACAAGACTTATCTTCCACAACACAGCACCAAATGGGTAGCTATCTCCTACAATCAAGTGCAGGCGCCATTCCAGCGAGCCACGCTGCTAACATATGGATGGTGGCGAATTCAAACAATAATCAAGTCATGAGTGGTGATCCCATATGGACCTTCCCACAGGTTAATAACAGTGCTTTGTATCGAGGCACCATGTCCAGCGGGTTGCATTTCATGAATTTTCCTACACCCATGGCCTTGTTGCCGAGTCAGCAACTAGGGTCTTCTGGGATTGGCGCTGTTGGGGGAAGCAGTAATAATAATAATAATAATAATAATAACAGTAATAATATGAATGAAGGGCATTTGAGTATGCTTGCGGGGCTTAATCCTTATCGTCCTGTTATTGGGGTTTCGGAATCTCAGGCGAGTGGGTCGCAATCGCATCGTGGAGGTGGCGCCGATGATCGCCATGATAATAGCACCAGTCACCACTCCTAG 1218 0.5608 MEGGDDLHHHHHHHRQNFPFQLLEKKEDQETASCSTSSPYPSLAISAEPSTSNSNRSNQLAAAPEPPNSKKPAPKRTSSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPNIALSSSDNTTNTSTSTLLNFQSNNLTTTMLQAKPELRDGVPSSLDLSDTTTEDTNLGRKRRPTEQDLSSTTQHQMGSYLLQSSAGAIPASHAANIWMVANSNNNQVMSGDPIWTFPQVNNSALYRGTMSSGLHFMNFPTPMALLPSQQLGSSGIGAVGGSSNNNNNNNNNSNNMNEGHLSMLAGLNPYRPVIGVSESQASGSQSHRGGGADDRHDNSTSHHS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01296 405 MobiDBLite consensus disorder prediction 336 363 - -
Pumo4g01296 405 MobiDBLite consensus disorder prediction 17 31 - -
Pumo4g01296 405 Pfam TCP family transcription factor 77 212 IPR017887 -
Pumo4g01296 405 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 25 360 IPR005333 GO:0003700
Pumo4g01296 405 MobiDBLite consensus disorder prediction 215 255 - -
Pumo4g01296 405 MobiDBLite consensus disorder prediction 376 405 - -
Pumo4g01296 405 MobiDBLite consensus disorder prediction 390 405 - -
Pumo4g01296 405 MobiDBLite consensus disorder prediction 1 92 - -
Pumo4g01296 405 MobiDBLite consensus disorder prediction 32 64 - -
Pumo4g01296 405 MobiDBLite consensus disorder prediction 235 249 - -
Pumo4g01296 405 MobiDBLite consensus disorder prediction 336 362 - -
Pumo4g01296 405 ProSiteProfiles TCP domain profile. 79 133 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01296 Pumo-Chr4 16556498 16558002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01296 69 398 TCP Transcription Factor Family AT3G47620 44.340 1.65e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo4g01296 TCP 1.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01296 - - gmx:100790785 603.594