Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01290 ATGTATGACATGGGGAGGCCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGACCTTGGATTCCAGAAGAGGACATCATCTTGGTGTCTTACATTCAAGAACATGGACCTGGGAATTGGAGATCAGTTCCCACCAACACTGGTTTGATGAGATGCAGCAAGAGCTGCAGGCTTAGATGGACTAACTATCTTCGACCTGGTATCAAACGTGGTAATTTCACGGAGCATGAGGAGAAGATGATAATTCACCTCCAAGCCCTTTTGGGAAACAGATGGGCAGCAATAGCTTCATATCTTCCACAAAGGACAGACAACGACATAAAAAACTATTGGAACACCCATTTGAAGAAGAAGCTGAAGCAAAGTGATCAAAGTGGGAGTGATGAGGGTGTTGACCAAGAGGGACATTCTTCTTCTAATTCACATCCAAAGGGTCAGTGGGAGAGAAGACTACAAACAGATATCCAAATGGCCAAGAAAGCCTTGTGTGATGCTTTGTCTCTTCACAAGCCAGCAACCACAACCCATGTTGTGCCTGAAGCCAAGCCTTCTTCAAGTTCTAATCAACCCTACAACCATGCATCATCATCTTCATATGCATCAAGCTACGAGAACATTTCACGATTGATGGAAAACTGGATGAAATCCCCAAACTCAAACTCAACAAATTCACCACCAGGGTATTATAATTCTTTCTTCAGCAACATGGTCAATAATAATACTACAACAGGATCCAGTTCTAGTGAGGGAGCACATAGCACCACCACTACACAAGATCATGGTTTTGACTCCTTGTTGACCCTAAACTCCTCCAAACACTATGGCTCTCCATCTCAGACGCAAGTGCCTCTTACGATGCTGGAGAATTGGCTTTTTGATGATGGGGCTGCTCAGTGTCATGAAGATCTGATAAACATGCCGCTGGAAGAAAGTACCGCAGGTTTGTTTTAA 951 0.4374 MYDMGRPPCCDKIGIKKGPWIPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTEHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKQSDQSGSDEGVDQEGHSSSNSHPKGQWERRLQTDIQMAKKALCDALSLHKPATTTHVVPEAKPSSSSNQPYNHASSSSYASSYENISRLMENWMKSPNSNSTNSPPGYYNSFFSNMVNNNTTTGSSSSEGAHSTTTTQDHGFDSLLTLNSSKHYGSPSQTQVPLTMLENWLFDDGAAQCHEDLINMPLEESTAGLF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01290 316 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Pumo4g01290 316 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Pumo4g01290 316 MobiDBLite consensus disorder prediction 178 197 - -
Pumo4g01290 316 MobiDBLite consensus disorder prediction 118 149 - -
Pumo4g01290 316 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Pumo4g01290 316 FunFam Transcription factor MYB96 72 152 - -
Pumo4g01290 316 CDD SANT 72 115 IPR001005 -
Pumo4g01290 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Pumo4g01290 316 MobiDBLite consensus disorder prediction 131 146 - -
Pumo4g01290 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 247 - -
Pumo4g01290 316 FunFam MYB-related transcription factor 16 69 - -
Pumo4g01290 316 CDD SANT 19 64 IPR001005 -
Pumo4g01290 316 Gene3D - 71 146 - -
Pumo4g01290 316 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Pumo4g01290 316 MobiDBLite consensus disorder prediction 240 259 - -
Pumo4g01290 316 SMART sant 69 117 IPR001005 -
Pumo4g01290 316 SMART sant 16 66 IPR001005 -
Pumo4g01290 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Pumo4g01290 316 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Pumo4g01290 316 MobiDBLite consensus disorder prediction 174 197 - -
Pumo4g01290 316 Gene3D - 16 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01290 Pumo-Chr4 16452269 16454265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01290 4 316 MYB Transcription Factor Family AT5G62470 49.866 3.23e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g01290 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01290 K09422 - gmx:100799402 548.51