Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01289 ATGAAAAAGAGGCAGGTGGTGGTGAAACGAGATTATGCCACGTCATCTTCAACGGTGGGGAATATTCGATACGGGGAGTGCCAGAAGAATCATGCGGCGAACACGGGAGGTTATGCTGTGGATGGTTGCAGGGAATTCATGGCCAGCGCGGGAGAAGGAACAACGGCGCTTACGTGTGCGGCTTGCGGCTGCCACAGGAACTTTCACAAGAGGGAAGTACTGCACGGCGTAAACTGA 237 0.5401 MKKRQVVVKRDYATSSSTVGNIRYGECQKNHAANTGGYAVDGCREFMASAGEGTTALTCAACGCHRNFHKREVLHGVN 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01289 78 Pfam ZF-HD protein dimerisation region 22 73 IPR006456 -
Pumo4g01289 78 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 23 73 IPR006456 -
Pumo4g01289 78 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 72 IPR006456 -
Pumo4g01289 78 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01289 Pumo-Chr4 16425707 16427257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01289 1 73 Zinc finger-homeobox gene family AT1G18835 72.000 2.74e-31 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo4g01289 ZF-HD_dimer 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01289 - - gmx:100797273 157.147