Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01285 ATGGAGTCTCAGGCATTTATGGGTTGGAGCTCTTACTATCAAATAGATGAAAAACCAGTTCCATTTACGTGCCAATTTTCTTACAGCGGAAACGGTGAAGTGTATCCTGCACTGGATTGGCCTTACGATTTTCCCATACAAGACTACTATCTTGATGTTGCTCCTCTCATGGACTATTACCCTTCAGATCCACTGTATGAAACTCTCGCCCTTGATCCAACACAAAGCGTGCGAGACTATGATTTTTATGATATTAAAAAGGGGTTACCTGTCTGGAACGAAGTTGATGCTGTGTTTGATTCAGAAAAAATAATTTTATTTGGCAACAAGGAAGAAAGTGGGAGTGGGAAGGAAATGATGGAAGATGGAAAAGTTAACCGAGGGACTAGCAGTAGCAGTAGCAGAATGTTATCAAGGAATACCATATCTGAGTACTTCTACATGCCCATATCACAAGCAGCCAGGGAACTTAACGTGGGCATAACGCTTTTGAAGAAAAGGTGCAGAGAATTGGGTATTCGAAGGTGGCCTCACAGGAAGCTCATGAGCTTGCAAACTCTCATAAATAATGTACAGGAGCTAGGGAAAGAGGAGGGGCCAGAGAGTGAAGAGAAGTTAAGAAGTGCCATTGAGATATTGGAGAGGGAAAAGAAGCTTTTGGAGGAGATGCCAGATACAGAACTTGAAGATACTACAAAAAGGCTTAGACAAGCGTGTTTCAAGGCCAACTACAAGAAGAGGAAGCTCACAGGGCGGAGGGAGCCACAGTCTTCTTCTTTCACTGGCTTTGCTTGA 795 0.4314 MESQAFMGWSSYYQIDEKPVPFTCQFSYSGNGEVYPALDWPYDFPIQDYYLDVAPLMDYYPSDPLYETLALDPTQSVRDYDFYDIKKGLPVWNEVDAVFDSEKIILFGNKEESGSGKEMMEDGKVNRGTSSSSSRMLSRNTISEYFYMPISQAARELNVGITLLKKRCRELGIRRWPHRKLMSLQTLINNVQELGKEEGPESEEKLRSAIEILEREKKLLEEMPDTELEDTTKRLRQACFKANYKKRKLTGRREPQSSSFTGFA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01285 264 ProSiteProfiles RWP-RK domain profile. 120 205 IPR003035 -
Pumo4g01285 264 PANTHER PROTEIN RKD4 130 257 IPR044607 GO:0003700
Pumo4g01285 264 Pfam RWP-RK domain 137 184 IPR003035 -
Pumo4g01285 264 Coils Coil 203 223 - -
Pumo4g01285 264 MobiDBLite consensus disorder prediction 113 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01285 Pumo-Chr4 16379265 16380397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01285 129 255 AtRKD Transcription Factor Family AT1G18790 67.717 1.12e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pumo4g01285 RWP-RK 6.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01285 - - gmx:100788666 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01285 4 16379265 16380397 Pumo4g01285 4 16379265 16380397 ECH