Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01277 ATGGGAAGAGTTAAATTGAAGATAAAGAAATTAGAGAGCATAAGCAATCGACATGTGACTTATTCAAAGCGAAAAAGTGGGATTGTAAAGAAAGCAAAGGAATTATCAATATTATGTGATATAGATATTGTCCTTCTCATGTTTTCTCCAACAGGAAAGCCTACATTACTACAAGGAGAGCGCAGCAATATTGAGGAGGTCATTGCAAAATTTGCTCAACTCAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAGAGCCTTGAAGCGCTAAAGAAAACCTTCAAGAAGTTGGACCATGATGTAAAAATACAAGATTTCTTAGGTTCAAGCAGTCAAACCGTGGAGGAATTATCTCATCAAGTGAGGGTTTTACAATCTCAGATCACAGAAGTGCATCAGAGACTGAGCTATTGGAATAATCTAGAGAAGATCAATAACTTGGAACATCTTAAGCAAATGGAAGACTCACTACGGGAATCAATCAATCGAGTGTGCCTACAGAAGGAAAATTTAGGAAAGCACCAACTCATTTCACTTGAATGTGCTAACCAGTTGCAGGAAGGGATGACATTACCCTTGATGATGGCAAGTCTACAAGAATCCCAACCCCTGTCTTGGCTTTTGAATAATGATAATAATCAGTTGATGTTACCCAGTGAACCAAAATTTCTATCATTTAGTGATAACACCAATAGAGATGCCGAGTGCTCCACTGACATTTCACTCCCAAGCTATTCTGGTTATATGGGGAGCAACAAACTTGAAGTTGGCAGCTCTCCCCAGGTCACTAATTTGGGTCAAGGAGGTGGTGCCATGAATGAGTTAAATGGAACTACTTACTTAAACGTACCACATTGTGACCAATTTGCATACCCTCCTCCACCAGATATTGAGGAAGTGAAAAATTTCCCAACAATGAACAGTAAATCAAACACTGCAGATTACCAAGTTAACAACAACTTTGATCTTCCCAGGTCACTATTTGAAAATGGACATCAGTTCTGGAATTCTGCTTCTGGGTCTTGTGGGATTGCCATGTATAATGAGAACGGTTACCATAGGTAA 1065 0.3944 MGRVKLKIKKLESISNRHVTYSKRKSGIVKKAKELSILCDIDIVLLMFSPTGKPTLLQGERSNIEEVIAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTVEELSHQVRVLQSQITEVHQRLSYWNNLEKINNLEHLKQMEDSLRESINRVCLQKENLGKHQLISLECANQLQEGMTLPLMMASLQESQPLSWLLNNDNNQLMLPSEPKFLSFSDNTNRDAECSTDISLPSYSGYMGSNKLEVGSSPQVTNLGQGGGAMNELNGTTYLNVPHCDQFAYPPPPDIEEVKNFPTMNSKSNTADYQVNNNFDLPRSLFENGHQFWNSASGSCGIAMYNENGYHR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01277 354 Coils Coil 77 97 - -
Pumo4g01277 354 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Pumo4g01277 354 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Pumo4g01277 354 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Pumo4g01277 354 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo4g01277 354 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo4g01277 354 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo4g01277 354 Coils Coil 114 134 - -
Pumo4g01277 354 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Pumo4g01277 354 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo4g01277 354 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Pumo4g01277 354 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 205 - -
Pumo4g01277 354 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01277 Pumo-Chr4 16308163 16313989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01277 1 276 Type I MADS-box Gene Family AT2G03060 50.526 3.82e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo4g01277 SRF-TF 3.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01277 - - pvu:PHAVU_003G189100g 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01277 4 16308163 16313989 Pumo4g01277 4 16308163 16313989 ECH