Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01276 ATGGCGTTTTTGGGTCTTCTCTTGGTGGGGTTTCTCTTAGGTGCTTACGGGGACAGTGATGGTTGGATGGATGCTCATGCTACCTTCTATGGAGGGGGTGATGCCTCTGGCACAATGGGTATGTCACAATTTACTGCTCTAGCACTAGTTCTTGCTAGGGTCCCATGCCAAAAGAGAGGAGGCATCAGGTTCACCATCAATGGCCATTCTTACTTCAACCTAGTCCTAATCACCAACGTTGGTGGTGCTGGTGATGTTCAAGCAGTTTCCATCAAGGGTTCAAGAACTAATTGGCAACCAATGTCCAGGAACTGGGGTCAGAACTGGCAAAGCAACACTTACCTCAATGGACAAAGCCTCTCGTTTAAAGTTACCACTAGCAACGGCCACACCTTGGTCTCTTACGATGTTGCTCCTGATAGCTGGTCCTTTAGCCAGACCTTCACAGGGCAACAATTCAATTAA 465 0.4796 MAFLGLLLVGFLLGAYGDSDGWMDAHATFYGGGDASGTMGMSQFTALALVLARVPCQKRGGIRFTINGHSYFNLVLITNVGGAGDVQAVSIKGSRTNWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSNGHTLVSYDVAPDSWSFSQTFTGQQFN 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01276 154 FunFam Expansin 61 153 - -
Pumo4g01276 154 Gene3D - 61 153 IPR036749 -
Pumo4g01276 154 SUPERFAMILY PHL pollen allergen 58 150 IPR036749 -
Pumo4g01276 154 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 71 150 IPR007117 -
Pumo4g01276 154 PANTHER EXPANSIN-A15 14 40 IPR002963 GO:0009664
Pumo4g01276 154 PRINTS Expansin signature 107 128 IPR002963 GO:0009664
Pumo4g01276 154 PRINTS Expansin signature 72 93 IPR002963 GO:0009664
Pumo4g01276 154 PRINTS Expansin signature 136 152 IPR002963 GO:0009664
Pumo4g01276 154 PRINTS Expansin signature 60 72 IPR002963 GO:0009664
Pumo4g01276 154 Pfam Expansin C-terminal domain 62 139 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01276 Pumo-Chr4 16304557 16306773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01276 1 40 Expansin Gene Family AT2G03090 53.488 7.76e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01276 - K20628 egt:105961626 210.69