Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01275 ATGGAAAACGTTCCGGTGGTGTGTAAGGAAGATGGTCAGATGGATTTGCCTCCCGGATTTCGGTTCCACCCTACGGATGAAGAGCTGATAAGCCATTACCTCCACAAGAAGGTCATTGACACCAAGTTCTGTGCCAGGGCTATTGGAGAAGTGGACCTAAACAAGTCTGAGCCTTGGGATTTGCCATGGAAAGCCAAAATGGGAGAAAAAGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCCACTGGGTTGAGAACCAACAGGGCCACAGAAGCAGGATACTGGAAGGCCACAGGAAAAGACAAGGAGATTTTCAGAGGAAAATCTTTGGTTGGAATGAAGAAAACTCTGGTTTTCTACCGAGGTCGAGCACCTAAAGGTGAAAAAAGCAATTGGGTCATGCACGAGTACAGACTCGAGGGGAAATTCTCTGTTCACAACCTCCCAAAAACTGCAAAGAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAAACTCATATTTCGGGGATAATGAGGTTGGACTCTTTTGCTAATGAATTTGGTTCTTCTGCTCTGCCACCTCTTTCGGATTCTTCGCCTTCTATTGGTAACACTAAACCTATGAATGATTCGGCTTACGTGCCCTGCTTCTCCAATCCACTTGATGTTCAAAGAAACCAAGAAGGGGTCTTTGATTCCTTCACCAACCATATTTATGGGGTTTCTTCAAATCCTTCGGACATTCTTCCCAGAATGCCACCTTCTGGCTCCTTCTACTCCACTCAAGTTGTTCAAGCTGTGCCTAATTTGGTATTTCCTGGTTCTGTTTACACTCTGCAGGATCACACCATCCTGAGAGCTTTGTGTGAAAACAATGGTTCAAACTTGACCAATGGTTACAAGTCAGAGAGGGACATGATCAGTGTTTCACAGGAAACGGGTCTAACTACTGATATCAACGCTGAAACCTCTTCAAATTTTGATATGGGTAGGAGGCCCTTTGACAATCACAGTCATCCATCTGTTTCTGTTGCCCCATTGGATCTTGATGGTTTGTGGAATTACTAA 1071 0.4472 MENVPVVCKEDGQMDLPPGFRFHPTDEELISHYLHKKVIDTKFCARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKTHISGIMRLDSFANEFGSSALPPLSDSSPSIGNTKPMNDSAYVPCFSNPLDVQRNQEGVFDSFTNHIYGVSSNPSDILPRMPPSGSFYSTQVVQAVPNLVFPGSVYTLQDHTILRALCENNGSNLTNGYKSERDMISVSQETGLTTDINAETSSNFDMGRRPFDNHSHPSVSVAPLDLDGLWNY 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01275 356 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Pumo4g01275 356 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Pumo4g01275 356 SUPERFAMILY NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Pumo4g01275 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 237 - -
Pumo4g01275 356 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Pumo4g01275 356 FunFam NAC domain-containing protein 100-like 25 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01275 Pumo-Chr4 16278351 16280255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01275 14 356 NAC Transcription Factor Family AT5G07680 58.309 1.24e-136 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g01275 NAM 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01275 - - gmx:100170719 686.026