Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01269 ATGACTACTGTGTATTTTTTATGCTTCACAGTTACTTCAGTAAGGTCAGCTAGGCAAGTAATTGATGCACTGAATGCGGATGGGCAATATATAGACATCATACTAGCTGAAGTTGACCTTCCAATAAAGAAAGGCATGAAGTTGTTGAAGTACATAGCAAGGGATCAAGAATTGCGCCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTTTCCATTGTTGTAAAGTGCTTGAGGCTTGGGGCAGCAGACTACCTAGTAAAGCCTTTACGCACAAATGAACTTTTAAATTTGTGGACACACATGTGGAGAAGGAGACGCATGCTTGGACTTGTAGAGAACAACATCTTGAATTATGACTTTGATCTGGTAGCATCAGATCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGACGACAAGTCCAAAAGAAACACTAATCCAGAGACAGGAATATCAATCCAACAAGAACAAGAGGCTAGTATTGCCACCACTGCTGCTGTTGTGGTGGAGATTCCCTATGGTCTTGTATCAGAATATCAGCCTGATGTGCCTGGAATAAGTGATCGTCGAACAGGACATTTTTCATCTGGTCCAAAGAAGAGTGAACTGAAGATTGGAGAGTCATCAGCCTTTTTCACCTATGTCAAAGCAACAACACAGAAGAGCAGCTTTGAAGAGAGTGCTCATGTTGACTATCATACTACTACACAAGTAAGGGTGGAAGATATGAATCAAGCACGTGCCGAACAGGGGGGTAATGACCCTAAAACACACGAAAATGGAGAAACGTTTGAAAACAATTCACAAGAAGACTTACCCAGCAGCAATAGTGTCCCGGATTCTTTCTCTATTGAGAGATCTTGTACTCCACCTGCATCAATGGAAGTTTTACAGCAAAAGCATTACAAGAAGGAACATCCTCAGGGAATGGTGCATCCAAGAAATGGAAGTCATGGCTCTGAGCTTGAACCATCCGGCTTGCCTGCCCAACATGCATATCCATATTATATTTCAGGAGTTGTCAATCATGTTATGATGCCATCATCAACACAACTGTATCAAAAGAATATCCAGGATCTGCAGAGTCATGCTGGTTCTTCTATGATTGCACAGTACAATCATCTTCCCCAGTGTCCTCCTCATGCAAATGGGATGACATCCTTCCCATATTATCCAATGAGTATTTGCTTACAGCCTGGTCAGATTTCTACAACTCATTCTTGGCCATCATTAGGAAGTTCAAGTTCATGCGAAGTAAATTTAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATGAAGTTTAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAACAGAAAACGGCTTGCTGAAAGGCGGCCTCGTCTGAGGGGACAATTCGTCAGAAAGTTGAACGGTGTTAATGTGGATCTTAACGGACAACCTGCTTCCACTGATTATGATGAAGATGATGAAGAGGAGGAAGACAACCATGTAGCAAGAGATTCCTCTCCTGAGGATGCTTGA 1545 0.4201 MTTVYFLCFTVTSVRSARQVIDALNADGQYIDIILAEVDLPIKKGMKLLKYIARDQELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYDFDLVASDPSDANTNSTTLFSDDTDDKSKRNTNPETGISIQQEQEASIATTAAVVVEIPYGLVSEYQPDVPGISDRRTGHFSSGPKKSELKIGESSAFFTYVKATTQKSSFEESAHVDYHTTTQVRVEDMNQARAEQGGNDPKTHENGETFENNSQEDLPSSNSVPDSFSIERSCTPPASMEVLQQKHYKKEHPQGMVHPRNGSHGSELEPSGLPAQHAYPYYISGVVNHVMMPSSTQLYQKNIQDLQSHAGSSMIAQYNHLPQCPPHANGMTSFPYYPMSICLQPGQISTTHSWPSLGSSSSCEVNLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRLRGQFVRKLNGVNVDLNGQPASTDYDEDDEEEEDNHVARDSSPEDA 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01269 514 MobiDBLite consensus disorder prediction 273 294 - -
Pumo4g01269 514 SUPERFAMILY CheY-like 9 111 IPR011006 -
Pumo4g01269 514 Pfam CCT motif 434 476 IPR010402 GO:0005515
Pumo4g01269 514 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 224 IPR045279 GO:0009736
Pumo4g01269 514 MobiDBLite consensus disorder prediction 135 158 - -
Pumo4g01269 514 ProSiteProfiles Response regulatory domain profile. 1 104 IPR001789 GO:0000160
Pumo4g01269 514 ProSiteProfiles CCT domain profile. 434 476 IPR010402 GO:0005515
Pumo4g01269 514 MobiDBLite consensus disorder prediction 254 294 - -
Pumo4g01269 514 Pfam Response regulator receiver domain 10 98 IPR001789 GO:0000160
Pumo4g01269 514 MobiDBLite consensus disorder prediction 478 514 - -
Pumo4g01269 514 MobiDBLite consensus disorder prediction 309 332 - -
Pumo4g01269 514 Gene3D - 6 177 - -
Pumo4g01269 514 SMART REC_2 1 100 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01269 Pumo-Chr4 16167544 16172563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01269 9 513 Response Regulator Gene Family AT5G61380 48.054 2.20e-161 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Pumo4g01269 Response_reg 1.7e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01269 K12127 - gmx:100786522 883.634