LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g01264	ATGCATTGCACCCTCTCCAAAACAAAAAAAACCATCCTTCAGTTTCTTCCTCGTATTCATGTACCCCCATCGTCATGTCCACCCTTCCTCCACCCTCATTGTGGAACCTCAACAATGGAAGTAGAAAACAAAAGAATCATAGTGAAGCTTCCTTTTGTGTCATACCTTTCCATTCTTCACCTTTTCCTTTTTACCCTCGCCAAATGTGACTCTTCTTTCACACCTAATGTCAACTATCTCATTGATTGTGGCTCCCCCCACCCCACTCAGCTCAAAGATGGTAGAACCTTCAAATCTGATCGTGAAACCACTTCCCTCCTATCCACAACTGAAGATGTGCAAATATCACTTGACTCAAATCTCTCCCCTTCTGTTCCTTCTTCATCATTGCCTTTGTATCAAACTGCAAGAGTTTTTCAAGATGAATCCACCTACTCCTTTTACATCTCCAAAACTGGTAGACTTTGGATTCGTCTCTACTTCTTCCCTCTCCCTGACCCTTCCTATAACCTAACAAGTGCTGTTTTCTCTGTCCAAACTGATCACCACGTGCTCTTGCATGAGTTCTCTGTGAGGAACAATGACTCACCTGTTTTCAAGGAATACCTTGTTAATGTTTCTGATAGTAGATTCTCCCTTAAATTCAAGCCCAAGAAAAACTCCTTTGCTTTCATCAATGCCATTGAGGTTGTCTCAGCCCCTGACATTCTTATATCTGATTCAGCAACTGCAATTTCCCCACTTGGAGAATTCAAAGGGTTGTCAAATTCTGCTCTTGAAGTATCCTACAGAATAAATGTCGGTGGCCTAATCATAACTCCTGAAAATGATACCTTGTCAAGAACATGGGAACCTGATGCATCTTACAACATCTTCCCCCAAGGTTCTGAGACTATTTCTGTCTCCAACAAAAGCATCAAGTATCCTCGTACTGGGGTTACACCTTTGATTGCTCCAAACTCGGTTTATGCAAGTGCTGTACACATGAAGGATCCTAGAGTTATGGAACCAAATTTCAATCTTAGTTGGGTTGTGAACGTGGAAAGTAGCTACTCTTATTTGATAAGAATGCATTTCTGTGACATTGTGAGCAAGAGTCTCAACCAGTTATACTTTAATGTGTACATCAACGGGATTGAGGGTGTGCAAGCTTTGGACCTTTCATCTCAAACCAAAGCTCTAGCCACTGCTTTTTACAAGGACTTTGTGCTAAATGCATCTTCCATCACAAACGGTTCCATTTTGGTTCAGGTGGGACCAGCTAATCTACAACAAGGCACGGCCAATGCAATTTTGAATGGAATTGAGGTGATGAAGATGAGCAACAATGCAGACAGCTTGGATGGTTTTTTCTCTGTTGATGGGAAATACAAAGGGCCAAGTTTAACAACCAAGGCAATGAAATTTTTTGCATGCGTTGGAATAGCATTGGCTGTGACAACATTGTTGTTGCTAACATTGATTTGTATAAGGTGGAAAAAGAGGCCTCAAGATTGGGAAAAGCATAACAGGTTCACATCATGGCTCCTCCCTATCCATTCAACTAGATTGTTTTCAAGCAAAAGTAGTAGTCGAAGCTCAACTGCATTCAGTTCCCACAAGAGCAATAAGCGTGGTCATGTCTCCCCAAAAGGGCCTGAAAGGTTTTTCCCCTTCAGTGAAATGCTCCAAGCCACCAATAATTTCGATGAGAAGAAAGTGATAGGCATTGGAGGCTTCGGGAAAGTGTATCTTGGAACGTTGGAAGATGGGACAAAGGTTGCTATAAAACGAGGAAGTGGTAGTTCAGAACAAGGCATCAATGAGTTCAGAACAGAACTAGAAATGCTCTCAAAGCTGCGCCATCGCCACCTTGTCTCTTTGATGGGTTTCTGTGATGAAAATTCAGAGATGGTTCTTGTGTATGAGTACATGGCTAATGGCCCCTTCCGTTCCCACCTCTATGGCTTCAACCTCCCTCCTTTGTCATGGGAAAAGAGGCTTGAAATATGCATTGGTGCAGCTCGTGGCTTGCACTATCTCCACACTGGTGCAGCTCAAAGCATCACACACCGTGATGTGAAGACAACAAACATCCTCTTAGATGAGAATTATGTTGCCAAGGTTTCTGACTTTGGTTTGTCAAAAGCTGTTTCAGAGAAAGCTCAAGTTAGCACAGCTGTGAAGGGTAGTTTGGGGTACCTTGACCCTGAGTATTATAGGAGCCAACAATTAACTCAGAAATCTGACATATACTCTTTTGGGGTAGTACTAATTGAGGTACTTTGTGCTAGGCCAGTTATTTGCCCTACACTGCAAAGAGAGGAGATTAACTTGGCTGATTGGGCAATGGCACAGCACAGAAAAGGAGTGCTCTATGAAGTAATTGATCCACGAATTATTGAGACTATTAGTCCTCAATCCTTCAATGTTTTTGTGCAAATTGCTGAGAGATGTTTAGCTGATTGTGGAGTTGATAGGCCTAGTATGGGGGATGTGTTGTGGCATTTGGAACATGCTTTGCGCCTACAAGAAGATGCCACACGGATTAAAGAACATGAAGATAAAAGTGCAAGTATTGTCACAAATGAATATAATGACGATATAGCAGGTTACTCGGGTGATCCAGCAAGTGATGTGTCTGATAGCACAGATGCTAATTCTGCTTTGTTTTCTCAGATAGCCAACTTTCAGGGAAGATAA	2682	0.4224	MHCTLSKTKKTILQFLPRIHVPPSSCPPFLHPHCGTSTMEVENKRIIVKLPFVSYLSILHLFLFTLAKCDSSFTPNVNYLIDCGSPHPTQLKDGRTFKSDRETTSLLSTTEDVQISLDSNLSPSVPSSSLPLYQTARVFQDESTYSFYISKTGRLWIRLYFFPLPDPSYNLTSAVFSVQTDHHVLLHEFSVRNNDSPVFKEYLVNVSDSRFSLKFKPKKNSFAFINAIEVVSAPDILISDSATAISPLGEFKGLSNSALEVSYRINVGGLIITPENDTLSRTWEPDASYNIFPQGSETISVSNKSIKYPRTGVTPLIAPNSVYASAVHMKDPRVMEPNFNLSWVVNVESSYSYLIRMHFCDIVSKSLNQLYFNVYINGIEGVQALDLSSQTKALATAFYKDFVLNASSITNGSILVQVGPANLQQGTANAILNGIEVMKMSNNADSLDGFFSVDGKYKGPSLTTKAMKFFACVGIALAVTTLLLLTLICIRWKKRPQDWEKHNRFTSWLLPIHSTRLFSSKSSSRSSTAFSSHKSNKRGHVSPKGPERFFPFSEMLQATNNFDEKKVIGIGGFGKVYLGTLEDGTKVAIKRGSGSSEQGINEFRTELEMLSKLRHRHLVSLMGFCDENSEMVLVYEYMANGPFRSHLYGFNLPPLSWEKRLEICIGAARGLHYLHTGAAQSITHRDVKTTNILLDENYVAKVSDFGLSKAVSEKAQVSTAVKGSLGYLDPEYYRSQQLTQKSDIYSFGVVLIEVLCARPVICPTLQREEINLADWAMAQHRKGVLYEVIDPRIIETISPQSFNVFVQIAERCLADCGVDRPSMGDVLWHLEHALRLQEDATRIKEHEDKSASIVTNEYNDDIAGYSGDPASDVSDSTDANSALFSQIANFQGR	893

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g01264	893	PANTHER	OS07G0166700 PROTEIN	548	837	IPR045272	GO:0004714\|GO:0006468
	Pumo4g01264	893	FunFam	receptor-like protein kinase FERONIA	521	637	-	-
	Pumo4g01264	893	FunFam	Putative receptor-like protein kinase	78	234	-	-
	Pumo4g01264	893	Pfam	Malectin-like domain	81	440	IPR024788	-
	Pumo4g01264	893	Pfam	Protein tyrosine and serine/threonine kinase	565	759	IPR001245	GO:0004672\|GO:0006468
	Pumo4g01264	893	SUPERFAMILY	Protein kinase-like (PK-like)	538	831	IPR011009	-
	Pumo4g01264	893	CDD	STKc_IRAK	568	831	-	-
	Pumo4g01264	893	SMART	serkin_6	562	830	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g01264	893	FunFam	Receptor-like protein kinase FERONIA	258	442	-	-
	Pumo4g01264	893	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	682	694	IPR008271	GO:0004672\|GO:0006468
	Pumo4g01264	893	MobiDBLite	consensus disorder prediction	523	543	-	-
	Pumo4g01264	893	ProSiteProfiles	Protein kinase domain profile.	562	835	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g01264	893	ProSitePatterns	Protein kinases ATP-binding region signature.	568	590	IPR017441	GO:0005524
	Pumo4g01264	893	Gene3D	Phosphorylase Kinase; domain 1	521	637	-	-
	Pumo4g01264	893	FunFam	Receptor-like protein kinase FERONIA	638	852	-	-
	Pumo4g01264	893	Gene3D	-	258	442	-	-
	Pumo4g01264	893	Gene3D	-	74	234	-	-
	Pumo4g01264	893	Gene3D	Transferase(Phosphotransferase) domain 1	638	860	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g01264	Pumo-Chr4	16153287	16155968	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g01264	66	850	Receptor kinase-like Gene Family	AT5G61350	60.100	0.0	977

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Pumo4g01264		Malectin_like	3e-39	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g01264	-		-	gmx:100814982	1463.74