LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g01261	ATGGGGTGTGTGGTTGCGAAGCAGGCGGTGTCTGTGACGCCTGCGGTTGAGCACTCGGTTGAGTCGGATAAGAACAGGAAGAAGAAGACTGAGTCAGTGGGGGCGAGTAGGAGCGAGTTGGGTGAGTCGGGGAGAGCGAGTTCCAATGGTGGAAGTGAGTCTCTGAGCTTCAGGTTGGGGAACCTGAGCAAGTACGTGGAGGGAGAGCAGGCGGCGGCGGGTTGGCCGGCGTGGCTCAGCGCCGTCGCCTGTGAGGCCATTCACGGTTGGGTGCCTCTTCGAGCTGACGCATTTGAGAAACTTGATAAGATTGGGCAGGGAACATATAGTAGTGTATTCCGAGCAAAGGAGATTGAGACCGGAAAGATAGTGGCTTTGAAGAAGGTGAGGTTTGACAATTTTGAGCCAGAGAGTGTGAGGTTTATGGCACGAGAAATAATGATTCTTAGGAGGCTTGATCATCCAAACATCATTAAACTGGAGGGCTTGATTACTTCTAGATTGTCTTGTAGCATATACCTTGTGTTTGAGTACATGGAGCACGACATCACGGGGCTCTTGTCTAGACCAGAAATCAAGTTTAGTGAATCACAGATCAAATGCTACATGAAACAGTTGCTATCTGGTCTTGAGCATTGTCACTCGCGGGGTGTAATGCACCGGGACATCAAAGGATCAAATCTTTTGGTGAACAATGAAGGGATATTGAAGGTGGCAGATTTTGGATTGGCAAATTTCTCCAATTCTGGGAACAAGCAGCCCCTCACTAGTCGTGTTGTCACCTTATGGTACCGTCCTCCAGAACTTTTGCTCGGTTCGACAGGTTATGGTCCATCCGTGGATCTCTGGAGTGTTGGCTGTGTATTTGCAGAACTACTAATTGGGAAACCTATACTTCAGGGGAGAACTGAGGTTGAGCAATTGCACAAAATTTTCAAGCTTTGTGGCTCCCCACCCGAAGAATACTGGAAAAAGACCAGACTTCCTCATGCAACATTGTTCAAGCCACAGCAACCATATGATAGTTGCCTCCGAGAGACATTTAAAGATTTTCATGCATCCAGTGTATATCTTCTACAAACTCTTCTTTCTGTTGAACCAAGCAAACGTGGGACTGCCTCCTCTGCTCTCTCATTAGAGTATTTCAAAACAAAACCTTATGCATGTGACCCATCAAGCTTACCAACATACCCACCTAGCAAGGAGATTGATGCAAAACATGAGGAGGAATCAAGAAGGAAAAAGATTGGTGGGCGAGCTTGTGGACCAGAATCAAGAAAACCATCAAGAAAGCCACTAGCACTCAGTAAATTAGCCCCAGCAGAGGATTTGACAAGTCAAACTCAAACTTCCCAAAAGATGGATGATAGATCTGTCCACATCATTAAAGAAGAGAACACTAACACATGTGAGGAGGCACCAAAGCAGTCTAGTGGTAAACCAGAAGATGCTTCTTATATGAAGAATGCATCTCAAGTAGATATTCCCTTTCCTGGACCATTGCAAGTTTCAAAATCAAGTGGCTTTGCATGGGCAAAAAGGCGTAGAGACGACACTTCAATTAGATCCCACAGTCGGTCTATTTCTAGAGGATATCTCTTTAATTCATTAGAAACTTCTACACTAAATTCAAGGAATAATTCTGAATCCAGAAACTATGAAAATAAGGAATTTTTCGGGGCACGCACCAACTCTAGGGGCAATGATCTACTTGAAATTTCTAAGCTTGCCATGCAAAATCAATGGACTAAGTTTGATCGTCCAGATTCATTTGATACTTGTGACGAGTACCATTCACAAGAACTGTCCATGGCACTTTATAACAGGCAAGATTCACTATCCAAGAGAAGTAACCTGGTAAGTTTATTAAGTTGTTACATTTTTTAA	1887	0.4446	MGCVVAKQAVSVTPAVEHSVESDKNRKKKTESVGASRSELGESGRASSNGGSESLSFRLGNLSKYVEGEQAAAGWPAWLSAVACEAIHGWVPLRADAFEKLDKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTGYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKTRLPHATLFKPQQPYDSCLRETFKDFHASSVYLLQTLLSVEPSKRGTASSALSLEYFKTKPYACDPSSLPTYPPSKEIDAKHEEESRRKKIGGRACGPESRKPSRKPLALSKLAPAEDLTSQTQTSQKMDDRSVHIIKEENTNTCEEAPKQSSGKPEDASYMKNASQVDIPFPGPLQVSKSSGFAWAKRRRDDTSIRSHSRSISRGYLFNSLETSTLNSRNNSESRNYENKEFFGARTNSRGNDLLEISKLAMQNQWTKFDRPDSFDTCDEYHSQELSMALYNRQDSLSKRSNLVSLLSCYIF	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g01261	628	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	218	230	IPR008271	GO:0004672\|GO:0006468
	Pumo4g01261	628	ProSitePatterns	Protein kinases ATP-binding region signature.	104	127	IPR017441	GO:0005524
	Pumo4g01261	628	MobiDBLite	consensus disorder prediction	14	53	-	-
	Pumo4g01261	628	Pfam	Protein kinase domain	98	382	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g01261	628	SUPERFAMILY	Protein kinase-like (PK-like)	91	389	IPR011009	-
	Pumo4g01261	628	MobiDBLite	consensus disorder prediction	465	484	-	-
	Pumo4g01261	628	MobiDBLite	consensus disorder prediction	401	426	-	-
	Pumo4g01261	628	PANTHER	CELL DIVISION PROTEIN KINASE	96	386	-	-
	Pumo4g01261	628	ProSiteProfiles	Protein kinase domain profile.	98	382	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g01261	628	MobiDBLite	consensus disorder prediction	19	35	-	-
	Pumo4g01261	628	Gene3D	Transferase(Phosphotransferase) domain 1	181	421	-	-
	Pumo4g01261	628	Gene3D	Phosphorylase Kinase; domain 1	85	180	-	-
	Pumo4g01261	628	FunFam	probable serine/threonine-protein kinase At1g54610	181	421	-	-
	Pumo4g01261	628	MobiDBLite	consensus disorder prediction	393	455	-	-
	Pumo4g01261	628	FunFam	probable serine/threonine-protein kinase At1g54610	85	180	-	-
	Pumo4g01261	628	MobiDBLite	consensus disorder prediction	441	455	-	-
	Pumo4g01261	628	SMART	serkin_6	98	382	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g01261	628	CDD	STKc_CDK9_like	98	382	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g01261	Pumo-Chr4	16098143	16103495	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g01261	90	442	Core Cell Cycle Gene Families	AT5G10270	49.593	1.22e-116	355

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pumo4g01261		Pkinase	1.7e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g01261	-		-	gmx:100784406	1156.35