Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01256 ATGTCAGAGCAGGAAACACATTCCTGTGGTTTACTCTTATTCTTTTTCTTGATCCTTCTTTCAGGTGAAGTTGTTGTAGGGGAATCTTTGGACACAGACAAAGAGGTTCTGCTGAAGCTGAAATTGTACCTGGACAACAAAACTCTTGCAGACAGAGGAGGGTACATATATTGGAACACCAACAGCTCCAATCCTTGTGAATGGAAAGGAATTTCATGCAATGCTTCGAGGGTGGTTGGCATAGACCTTTCTCACAGTGACATCACCGGTGAGATTTTTAAGAACTTTTCACAGCTCACTGAACTCACACACCTTGATCTCTCTCAGAACACACTCTCTGGTGATATTCCTGAGGACTTGAGGCACTGCCACAAGCTCGTGCATCTCAACCTATCACATAATATTCTTGAAGGGGAGCTGAACTTGACTGGATTGATAAGCTTGCGCACACTGGACATGTCAAATAACAGATTTTATGGGGATATTGGGTTGAATTTCCCTGCCATTTGTGCCAATTTAGTCACTGCGAATGTCTCAGGTAATAAATTGACTGGTGGGATTGAAAACTGCTTTGATCAATGTCTCAAGTTGCAGTATTTGGATTTGAGCACCAACAATCTGAGTGGAAGCATATGGATGAAGTTTGCGAGGCTCAAAGAGTTTTCTGTTGCGGAGAACCATCTAAGTGGGACTATTCCTTTGGAAGCTTTTCCTTTGAATTGTAGCCTTGAAGAACTAGACATTTCACAAAATGGTTTTGTTGGTGAGGCACCTAATGGGGTTGCTAACTGTAAGAATTTAAGCAGTCTGAATCTTTCTAGTAACAAGTTTACTGGGGGTATTCCCGTTGAAATAGGGTCCATTTCGGGCCTCAAAGCATTGTACTTGGGGAACAACAGCTTTAAAAGAGAGATTCCTGAGGCGCTTCTGAACTTGACCAATTTGGCCTTCTTGGATTTGAGCAGAAACGGATTTGGTGGGGACATACAAGATATATTTGGGAAATTTAAGCAAGTAAGCTTTCTTCTGTTGCACTCAAATAATTACACTGGAGGATTGAGATCCTCAGGAATTCTCACATTGCCAAAAATTTGGCGGTTAGACCTAAGCTACAATAACTTTTCAGGTCCATTACCTGTTGAGATCTCTCAAATGACAAGTCTGAAGTTTCTAATGTTATCCTACAACCAGTTCAATGGATCCATTCCAACTGAATTTGGAAACATGACTCAACTCCAAGCACTTGACCTTGCCTTTAACAATTTGAGTGGGCCTATACCCCCAAGCCTTGGAAACTTGAGCTCCCTCTTATGGTTGATGCTTGCAGACAATTCTTTAACCGGAGAAATCCCTCGAGAGTTGGGAAACTGTTCAAGCTTGTTATGGCTAAACCTTGCCAACAATAAGCTCTCTGGAAAGTTGCCTTCTGAACTGTCCCAAATTGGAAGGAAGGCCATGATCACATTTGAATCAAATAGGCGAGACTATCGAATGGTTGCTGGATCTGGTGAATGCTTAGCAATGAGGAGATGGATACCTGCAGATTACCCTCCATTCAGCTTTGTGTATACCCTCTTAACCAGGAAAACATGTAGAGAGCTTTGGGACAAATTGCTCAAAGGCTATGGTGTTTTCCCGTTTTGCACACCTGGTTCTTCCTTTCGCAGAACCCAGATATCCGGGTATATTCAGCTAAGTTCGAACCAGCTCAGTGGTGAAATCCCTTCAGAGATTGGGACAATGGTGAACTTCAGCATGATGCACTTGGGGTTCAACAACTTCTCTGGGAAGCTCCCTCCAGAGATGGGAAGTATTCCCATTGTGGTGTTAAACATCACAACAAACCAGTTTTCAGGTGAAATTCCCGAAGAAATTGGCAACTTGAAGTGTTTGATGAATCTTGACTTGTCATGCAACAATTTCTCTGGGACGTTTCCCACAAGTTTGAACAAATTGACAGAGCTTAACAAGTTCAACATCTCATACAACCCCTTAATAACCGGTGTGGTCCCATCAACCGGGCAATTTGCTACCTTTGAGAAAAATTCATATTTAGGCAACCCCCTTTTGATCCTTCCCGAGTTTATTGATAACGTTACCAATGATAGAAACACCACCTCTCCCAAAGAGCATAAAAAGTCCACAAGAATGTCTGTGTTTTTGGTGTTTATAGTTATAGCACTGGTTTTTGCAGTATTTGGGCTTCTTACAATCCTAGTCTGTGTATCGGTGAAAAGCCCTTCAGAGGAACCAACGTACCTCTTGAGGGATACAAAACAGTGGCATGAATCCAGCAGCTCCGGATCCTCATCATGGATGTCTGACACAGTTAAGGTTATCCGTTTGAACAAGACAGCTTTCACACATGCTGACATTCTGAAAGCAACTAGCAGTTTCTCAGAGGATAGAATTATAGGAAAGGGAGGGTTTGGAACAGTGTACAAGGGAGTGTTTTCAGATGGCAGACAAGTGGCAGTGAAGAAGCTCCAAAGTGAAGGCCTAGAGGGTGAGAAGGAATTCAAGGCAGAAATGGAGGTTCTGAGTGGTCATGGCTTTGGTTGGCCTCACCCAAACCTGGTCACACTCTATGGTTGGTGCCTAAATGGTTCAGAGAAGATACTGATTTATGAGTACATAGAGGGTGGAAGCTTGGAGGATTTGGTCACTGATAGAACACGTTTGACATGGAGGAGGAGGCTAGAAGTGGCAATTGATGTGGCACGTGCACTAGTCTATTTGCACCACGAGTGCTACCCTTCTATTGTGCACAGAGATGTGAAGGCTAGCAATGTGTTACTAGACAAGGATGGGAAGGCCAAGGTTACTGATTTTGGGCTTGCAAGAGTGGTTGATGTTGGGGATAGTCATGTGAGTACTATGGTGGCTGGGACAGTGGGCTATGTTGCACCTGAATATGGACACACATGGCAGGCTACTACAAAAGGGGATGTGTACAGTTTTGGGGTGTTGGTTATGGAGCTAGCAACAGCAAGAAGAGCAGTGGATGGAGGGGAAGAGTGTTTGGTGGAGTGGGCTAGGCGTGTTATGGGTTATGGACGACATCGTGGGTTGAGTCGTTCTGTGCCAGTTTTGCTAATGGGTTCTGGGCTTGTTGGTGGGGCTGAGGAAATGGGTGAGTTGCTAAGGATTGGGGTGATGTGTACAGCTGATGCACCACAGACTAGGCCTAACATGAAGGAGGTTCTTGCTATGCTGATTAAGATATCCAACCCCAAGGGGGACTCAAGTTATGGACACTACCTTGTTTAG 3270 0.4401 MSEQETHSCGLLLFFFLILLSGEVVVGESLDTDKEVLLKLKLYLDNKTLADRGGYIYWNTNSSNPCEWKGISCNASRVVGIDLSHSDITGEIFKNFSQLTELTHLDLSQNTLSGDIPEDLRHCHKLVHLNLSHNILEGELNLTGLISLRTLDMSNNRFYGDIGLNFPAICANLVTANVSGNKLTGGIENCFDQCLKLQYLDLSTNNLSGSIWMKFARLKEFSVAENHLSGTIPLEAFPLNCSLEELDISQNGFVGEAPNGVANCKNLSSLNLSSNKFTGGIPVEIGSISGLKALYLGNNSFKREIPEALLNLTNLAFLDLSRNGFGGDIQDIFGKFKQVSFLLLHSNNYTGGLRSSGILTLPKIWRLDLSYNNFSGPLPVEISQMTSLKFLMLSYNQFNGSIPTEFGNMTQLQALDLAFNNLSGPIPPSLGNLSSLLWLMLADNSLTGEIPRELGNCSSLLWLNLANNKLSGKLPSELSQIGRKAMITFESNRRDYRMVAGSGECLAMRRWIPADYPPFSFVYTLLTRKTCRELWDKLLKGYGVFPFCTPGSSFRRTQISGYIQLSSNQLSGEIPSEIGTMVNFSMMHLGFNNFSGKLPPEMGSIPIVVLNITTNQFSGEIPEEIGNLKCLMNLDLSCNNFSGTFPTSLNKLTELNKFNISYNPLITGVVPSTGQFATFEKNSYLGNPLLILPEFIDNVTNDRNTTSPKEHKKSTRMSVFLVFIVIALVFAVFGLLTILVCVSVKSPSEEPTYLLRDTKQWHESSSSGSSSWMSDTVKVIRLNKTAFTHADILKATSSFSEDRIIGKGGFGTVYKGVFSDGRQVAVKKLQSEGLEGEKEFKAEMEVLSGHGFGWPHPNLVTLYGWCLNGSEKILIYEYIEGGSLEDLVTDRTRLTWRRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKDGKAKVTDFGLARVVDVGDSHVSTMVAGTVGYVAPEYGHTWQATTKGDVYSFGVLVMELATARRAVDGGEECLVEWARRVMGYGRHRGLSRSVPVLLMGSGLVGGAEEMGELLRIGVMCTADAPQTRPNMKEVLAMLIKISNPKGDSSYGHYLV 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01256 1089 Gene3D Phosphorylase Kinase; domain 1 761 878 - -
Pumo4g01256 1089 Gene3D Transferase(Phosphotransferase) domain 1 879 1084 - -
Pumo4g01256 1089 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 47 237 - -
Pumo4g01256 1089 Gene3D Ribonuclease Inhibitor 330 426 IPR032675 -
Pumo4g01256 1089 SMART LRR_typ_2 385 408 IPR003591 -
Pumo4g01256 1089 SMART LRR_typ_2 433 457 IPR003591 -
Pumo4g01256 1089 SMART LRR_typ_2 409 432 IPR003591 -
Pumo4g01256 1089 SMART LRR_typ_2 288 312 IPR003591 -
Pumo4g01256 1089 SMART LRR_typ_2 99 123 IPR003591 -
Pumo4g01256 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 921 933 IPR008271 GO:0004672|GO:0006468
Pumo4g01256 1089 Gene3D Ribonuclease Inhibitor 32 143 IPR032675 -
Pumo4g01256 1089 SUPERFAMILY RNI-like 70 283 - -
Pumo4g01256 1089 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 196 1067 - -
Pumo4g01256 1089 CDD STKc_IRAK 805 1075 - -
Pumo4g01256 1089 ProSiteProfiles Protein kinase domain profile. 799 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01256 1089 SUPERFAMILY Protein kinase-like (PK-like) 781 1074 IPR011009 -
Pumo4g01256 1089 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 879 1080 - -
Pumo4g01256 1089 FunFam Leucine-rich repeat receptor protein kinase EMS1 238 331 - -
Pumo4g01256 1089 FunFam Suppressor of npr1-1 constitutive 4 768 878 - -
Pumo4g01256 1089 Gene3D Ribonuclease Inhibitor 427 493 IPR032675 -
Pumo4g01256 1089 FunFam Putative LRR receptor-like serine/threonine-protein kinase 336 497 - -
Pumo4g01256 1089 Pfam Leucine rich repeat 81 134 IPR001611 GO:0005515
Pumo4g01256 1089 Gene3D Ribonuclease Inhibitor 552 698 IPR032675 -
Pumo4g01256 1089 SUPERFAMILY L domain-like 562 692 - -
Pumo4g01256 1089 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Pumo4g01256 1089 ProSitePatterns Protein kinases ATP-binding region signature. 805 828 IPR017441 GO:0005524
Pumo4g01256 1089 SMART serkin_6 799 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01256 1089 Pfam Protein kinase domain 800 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01256 1089 SUPERFAMILY L domain-like 215 477 - -
Pumo4g01256 1089 Gene3D Ribonuclease Inhibitor 238 329 IPR032675 -
Pumo4g01256 1089 Gene3D Ribonuclease Inhibitor 144 237 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01256 Pumo-Chr4 16049245 16053044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01256 66 1072 Receptor kinase-like Gene Family AT1G55610 33.393 1.06e-154 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Pumo4g01256 Pkinase 6.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01256 - - gmx:100816573 1972.21