Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01244 ATGGAAGGAGATCAAATTCAAGAATTGAAACACGCGTGCAAGTTCTGCGGCAAGAGCTTCCCTTGTGGCAGATCCTTGGGGGGTCACATGAGGTCTCATATCACCAACTTGTCATCTGAGGTGGAAGAAAAAGAAAAGCTTCCAACGAGGAAGCTTTCGTCGTCTCTCAACAATGATTCTGAAGCTGCTGCTGCAGCTAACGCTGGCTATGGCCTCAGAGAGAACCCAAAGAAGACTTGGAGAATCTCAGATTATTCAAGCGAGGACGCTTTGGTGTTTGACAAGTTCTGCAAAGAGTGTGGCAGAGGGTTCCACTCTTGGAAGGCCTTGTTTGGCCACATGAAATGCCACTCCGAGAAAGAAAGAGTTTCCAACAGCTTGGAAGATCAAGATTCTTGGACTAATGCTAAGGTGGTTATGGATAGCCAATCTGATAATGAAGCAACTGCTCCGAATAAGAGAAGAAGGTCCAAGAGAAGAACAAGGTACACGGTTGCTTCTGCAGCTGCAGCAGCAACTTCTTCGATTGTGTCTTTTGCAAATCCTTCTTCTTCTCTCTCTGAGGTTGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGATGTGAGTCCTTGGAGTGGTCCTCATTCTGTTGCTGAGTCCTCTGACAATAACTCTGCTTATTTCGAAGCTCGATCTTCAGTTCGAACTAATTTGGTTACAAAATTTGATGGCAACAAGAACTTCAGTGCCAACACAGCAAAACTGATCAAGCAAAGTGATAACAACAAGTGGAAGGTTGGAAATTCGGAAAATCCCAACTCAATAAGAGGGAAGAGTTCACAACTTTTGACCACTACTACTAATACTGCAGAGGTTCCTGAAAGTGGATTTCGAGTGAACAAAAGTGGAGTTTCCAATAAAGGGTATGAAAAAGCCAACAAGTCTGAGCTTGAGTATGTGTCTGCATTGGAGGATTCTGAAGGTGAACATGAGAGGAGCAGAGTCAATGGAACAGAATCAGTTTTATCAAAGTCGGCTACTACTGGCAACAAGTACAGTTCAATCAAGACAAAGTTTTCTGGTTCTGAATTGAAGTCAAATAAGAACTGGGTGGACAAGGCTTTGGAAGCTGAATCTAGCAAGAACTCTCATAAGAGAGGCAAGTTTGAGTGTACCGCTTGCAACAAAATCTTCCACTCATACCAAGCTCTTGGAGGCCATAGAGCTAGCCACAAGAAGATCAAAGGTTGCTTTGCTTCAAGGAATGAGAGCAGTGAAAACAGCATCGAAACTGAGCTCTCTCCTGACCCAATAACAACTTCAAACAAGCTCATGAAGAACAGTGACAGTGAGTATCTGGTGGAACATCAACATGGTGCTGGTTTTCATAATGAGGTGGAAACAGTTACTGAGTCCAAGAAGAGCAAAGGGCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGCCAAGCCTTGGGTGGCCATAAGAGATCTCATATGGTTGGTGGGTCTGAGAGTAGAAGCTTTCAAACAGTTGTGCTTCAGGAACCAGTGGCAGAAATTAGGGACTTCCTTGATCTTAATCTTCCTGCTGCCACTGAGGAAGAAAGCAATAGCCATGCTGATTCTAACAGACCCTGGTGGGTAGTAGAAGACAACCACAAACAGGAGGCACTGGTAGGCCTGATCTAA 1692 0.4444 MEGDQIQELKHACKFCGKSFPCGRSLGGHMRSHITNLSSEVEEKEKLPTRKLSSSLNNDSEAAAAANAGYGLRENPKKTWRISDYSSEDALVFDKFCKECGRGFHSWKALFGHMKCHSEKERVSNSLEDQDSWTNAKVVMDSQSDNEATAPNKRRRSKRRTRYTVASAAAAATSSIVSFANPSSSLSEVEQEQEEVAMSLMMLSRDVSPWSGPHSVAESSDNNSAYFEARSSVRTNLVTKFDGNKNFSANTAKLIKQSDNNKWKVGNSENPNSIRGKSSQLLTTTTNTAEVPESGFRVNKSGVSNKGYEKANKSELEYVSALEDSEGEHERSRVNGTESVLSKSATTGNKYSSIKTKFSGSELKSNKNWVDKALEAESSKNSHKRGKFECTACNKIFHSYQALGGHRASHKKIKGCFASRNESSENSIETELSPDPITTSNKLMKNSDSEYLVEHQHGAGFHNEVETVTESKKSKGHECPICLKVFPSGQALGGHKRSHMVGGSESRSFQTVVLQEPVAEIRDFLDLNLPAATEEESNSHADSNRPWWVVEDNHKQEALVGLI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01244 563 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Pumo4g01244 563 Gene3D Classic Zinc Finger 2 122 - -
Pumo4g01244 563 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 548 - -
Pumo4g01244 563 ProSitePatterns Zinc finger C2H2 type domain signature. 479 499 IPR013087 -
Pumo4g01244 563 SUPERFAMILY beta-beta-alpha zinc fingers 96 410 IPR036236 -
Pumo4g01244 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 477 499 IPR013087 -
Pumo4g01244 563 ProSitePatterns Zinc finger C2H2 type domain signature. 390 410 IPR013087 -
Pumo4g01244 563 Gene3D Classic Zinc Finger 385 499 - -
Pumo4g01244 563 MobiDBLite consensus disorder prediction 138 162 - -
Pumo4g01244 563 SMART c2h2final6 388 410 IPR013087 -
Pumo4g01244 563 SMART c2h2final6 11 33 IPR013087 -
Pumo4g01244 563 SMART c2h2final6 95 117 IPR013087 -
Pumo4g01244 563 SMART c2h2final6 477 499 IPR013087 -
Pumo4g01244 563 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Pumo4g01244 563 Pfam C2H2-type zinc finger 11 33 - -
Pumo4g01244 563 Pfam C2H2-type zinc finger 477 500 - -
Pumo4g01244 563 Pfam C2H2-type zinc finger 388 412 - -
Pumo4g01244 563 Pfam C2H2-type zinc finger 97 119 - -
Pumo4g01244 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Pumo4g01244 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 33 IPR013087 -
Pumo4g01244 563 SUPERFAMILY beta-beta-alpha zinc fingers 8 35 IPR036236 -
Pumo4g01244 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 388 415 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01244 Pumo-Chr4 15935451 15938239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01244 4 535 C2H2 Transcription Factor Family AT1G26610 33.945 3.15e-69 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g01244 zf-C2H2_6 5.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01244 - - gmx:102669916 927.546