Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01233 ATGGCGTCGTCGTCGGCGGCGAAGCGATGCCACTACGAAGTCCTGGGTCTCTCCCGCGACTGCGCCCCCGACGAGATCCGTTCGGCCTACCGTCGCTTGGCCCTCCAGCGCCACCCTGACAAGCTCGTGAAATCTGGTCTCTCCCAAGAAGAAGCCACCGCGCAGTTCCAGGAACTCCAGCACGCCTACGAAGTCCTCTCCGACCCCAAGGAACGCGCCTGGTACGACTCCCACCGCTCCCAAATCCTCTTCTCCGATCCCAACTCCGCCTCCAACTCCGTCGTTCCCGACCTCTTCTCCTTCTTCTCCAACACCGTCTATTCCGGCTACTCCGACACGGGAAAAGGTTTCTATAAAGTCTACGCCGACGTTTTCGATAAAATCCACGCGAACGAGATAAATTTCGCGCGGAAATTGGGGCTCGGCGTTGACGCGGTGAGACAGGCGCCTGTTATGGGGAACTTGGATAGCCCCTACGCGCAGGTTACCGCCTTTTATGGTTATTGGTTAGGGTTTTGTACTGTGATGGATTTTTGTTGGGTGGATGAGTATGATGTTATGGCGGGGCCGAACCGGAAGTCGCGGCGGCTTATGGAGGAGGAGAATAATAAGGTGAGGAGGAAGGCGAGGAGGGAGTATAATGATACTGTGAGGAGATTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGGTGAAGAGGAGTGTGGAGGAGGAGAGGAAGAGGGAGGAGGAGAGGGAGAGGAAGAGGAGGTTGGAGAAGGAGAGGAAGGAGAGGGCCATGGCGTACGAGGAGCCAGAGTGGGCTAAGGTTGGGGAGGATGACGAGGAGGAGGAGGAGGAGGTGGAGGAGAGAAAGAATGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAGTCCAAGAAGCATAAGGAGAGGGTTGCCGAGTTCAGAGATTCGATTAGTGATGAAGAGGATTTGGAAGGAGAAGGAGAGGAGAGATTGCAAAGTGAGGAGGATCAGGTTCGGGTGAATGGTGAGACTGATAATGGGATTGGTGATTTGGAGGCGAGGATTAGGGATGGTCTTAATGTTGAAGAGGGGGAGACTAGAAATGGGGTTGAACTGAATGACGACGATGATGATGAGTTTTTTGATGCCTTGCGTGTGAAGGAAGGGGAAGAGGCCGATGTGAAGGTTAATTTTGATGACGATGATGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGGCACAAGAACAGAAAACCACGAGCTTCAACACACAAACCCAAGGCTTCAGTAGCCCCGTCGCAAATTGAAAATGAGAATGATGAGGTTGGCTCTATGGAATACAACAACCGAAAGAGCACAAGAAAGAAACGTGCAGCCAAGAACGAGAAGGGTCGGAAAAATTGGGAAGAATCTCAGGGGGCTTCTGCCAGTGGCGATTATGAGAATATAAACAGTAATGTAAATGATAATTCTCATGCAGAAGAGTCTTGTTCCCAACATTTTGTGGAAAATGAGGCTAATGGTATAGAGAATGAGCAGGTTGGTAGAGATACGAAGATTTCTAATCAACCGGCTGATAAAAAAGGAGCTGGCAAGGACACAAAAACCAAAGCAAAAGTTTCATCCAAAGGAAGAAAAGGAAAGGTGACATCAAAGAATGTTGGCAATATTTGTGAGGCGTGTGGAGAGGAGTTTGAGTCAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCGTCAATAAAAGGTCGATAA 1800 0.4956 MASSSAAKRCHYEVLGLSRDCAPDEIRSAYRRLALQRHPDKLVKSGLSQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSASNSVVPDLFSFFSNTVYSGYSDTGKGFYKVYADVFDKIHANEINFARKLGLGVDAVRQAPVMGNLDSPYAQVTAFYGYWLGFCTVMDFCWVDEYDVMAGPNRKSRRLMEEENNKVRRKARREYNDTVRRLGDFVKKRDKRVIDMKVKRSVEEERKREEERERKRRLEKERKERAMAYEEPEWAKVGEDDEEEEEEVEERKNEKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFRDSISDEEDLEGEGEERLQSEEDQVRVNGETDNGIGDLEARIRDGLNVEEGETRNGVELNDDDDDEFFDALRVKEGEEADVKVNFDDDDENGVLEAMVAGHKNRKPRASTHKPKASVAPSQIENENDEVGSMEYNNRKSTRKKRAAKNEKGRKNWEESQGASASGDYENINSNVNDNSHAEESCSQHFVENEANGIENEQVGRDTKISNQPADKKGAGKDTKTKAKVSSKGRKGKVTSKNVGNICEACGEEFESRNKLHKHLGDSGHASIKGR 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01233 599 ProSiteProfiles Zinc finger C2H2 type domain profile. 295 324 IPR013087 -
Pumo4g01233 599 SUPERFAMILY beta-beta-alpha zinc fingers 287 337 IPR036236 -
Pumo4g01233 599 SMART ZnF_U1_5 292 326 IPR003604 GO:0003676|GO:0008270
Pumo4g01233 599 Coils Coil 239 266 - -
Pumo4g01233 599 MobiDBLite consensus disorder prediction 534 553 - -
Pumo4g01233 599 MobiDBLite consensus disorder prediction 440 455 - -
Pumo4g01233 599 Gene3D DnaJ domain 1 94 IPR036869 -
Pumo4g01233 599 Pfam DnaJ domain 11 76 IPR001623 -
Pumo4g01233 599 MobiDBLite consensus disorder prediction 408 566 - -
Pumo4g01233 599 SMART dnaj_3 9 71 IPR001623 -
Pumo4g01233 599 ProSitePatterns Nt-dnaJ domain signature. 56 75 IPR018253 -
Pumo4g01233 599 ProSitePatterns Zinc finger C2H2 type domain signature. 297 319 IPR013087 -
Pumo4g01233 599 MobiDBLite consensus disorder prediction 483 519 - -
Pumo4g01233 599 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 3 599 IPR044648 -
Pumo4g01233 599 ProSitePatterns Zinc finger C2H2 type domain signature. 571 593 IPR013087 -
Pumo4g01233 599 PRINTS DnaJ domain signature 12 30 IPR001623 -
Pumo4g01233 599 PRINTS DnaJ domain signature 30 45 IPR001623 -
Pumo4g01233 599 PRINTS DnaJ domain signature 51 71 IPR001623 -
Pumo4g01233 599 ProSiteProfiles Zinc finger C2H2 type domain profile. 569 598 IPR013087 -
Pumo4g01233 599 Pfam Zinc-finger double-stranded RNA-binding 295 320 IPR022755 -
Pumo4g01233 599 MobiDBLite consensus disorder prediction 330 344 - -
Pumo4g01233 599 MobiDBLite consensus disorder prediction 307 329 - -
Pumo4g01233 599 SMART c2h2final6 569 593 IPR013087 -
Pumo4g01233 599 SMART c2h2final6 295 319 IPR013087 -
Pumo4g01233 599 MobiDBLite consensus disorder prediction 370 389 - -
Pumo4g01233 599 SUPERFAMILY Chaperone J-domain 7 105 IPR036869 -
Pumo4g01233 599 ProSiteProfiles dnaJ domain profile. 10 79 IPR001623 -
Pumo4g01233 599 Gene3D Classic Zinc Finger 281 342 - -
Pumo4g01233 599 CDD DnaJ 10 68 IPR001623 -
Pumo4g01233 599 MobiDBLite consensus disorder prediction 307 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01233 Pumo-Chr4 15622176 15625183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01233 1 599 C2H2 Transcription Factor Family AT1G74250 51.840 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g01233 DnaJ 1.4e-21 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01233 K09506 - gmx:100788305 1012.29