Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01227 ATGGCTTTCTTCGGTAGAATGGGGAATTTGTTAAGACAGGCAGCGAGCAGACAGGTTAGTTTGGAATTGCGGTCATCCCCTTCTTTTTTTCAGGCTATACGCTGTATGTCTTCTGCTCCAAGCACAAAGCTGTTTATAGGAGGTGTTTCGTATTCTTCTGATGAGCAAAGCTTGAGGGAAGCTTTTTCAAAATATGGAGAAGTTGTTGATGCTAGGATAATTATGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTTATTACATACACTTCGGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGTCAGGATCTTCATGGTCGCCGGATTAGGGTGAATTATGCTAATGAAAGGCCTCTGGATATGATGGAAGTGCCGTGGATGGTGGTGTTAGGTACAGGTACTGGCACCAGCTTTGCTGATGGCTATGATGGAAGTGGGGGGTCGGAATTTGGCAGCAGTGGCCAATTAGATAGCAAAGCAAGCAGCAATGGAGATGAGGATTTCGGAGATTACAGGGATGACAATGATGCAGATAATTTTGCCAAAAGGGCTTGA 567 0.4533 MAFFGRMGNLLRQAASRQVSLELRSSPSFFQAIRCMSSAPSTKLFIGGVSYSSDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDLHGRRIRVNYANERPLDMMEVPWMVVLGTGTGTSFADGYDGSGGSEFGSSGQLDSKASSNGDEDFGDYRDDNDADNFAKRA 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01227 188 SMART rrm1_1 43 116 IPR000504 GO:0003723
Pumo4g01227 188 MobiDBLite consensus disorder prediction 152 166 - -
Pumo4g01227 188 MobiDBLite consensus disorder prediction 145 188 - -
Pumo4g01227 188 Gene3D - 31 182 IPR012677 -
Pumo4g01227 188 SUPERFAMILY RNA-binding domain, RBD 38 126 IPR035979 GO:0003676
Pumo4g01227 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Pumo4g01227 188 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 152 - -
Pumo4g01227 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Pumo4g01227 188 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 15 166 - -
Pumo4g01227 188 MobiDBLite consensus disorder prediction 167 188 - -
Pumo4g01227 188 CDD RRM2_NsCP33_like 43 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01227 Pumo-Chr4 15593903 15596509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01227 41 122 Eukaryotic Initiation Factors Gene Family AT4G34110 35.366 3.01e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01227 K12741 - gmx:100782808 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01227 4 15593903 15596509 Pumo4g01227 4 15593903 15596509 ECH