Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo4g01227 | ATGGCTTTCTTCGGTAGAATGGGGAATTTGTTAAGACAGGCAGCGAGCAGACAGGTTAGTTTGGAATTGCGGTCATCCCCTTCTTTTTTTCAGGCTATACGCTGTATGTCTTCTGCTCCAAGCACAAAGCTGTTTATAGGAGGTGTTTCGTATTCTTCTGATGAGCAAAGCTTGAGGGAAGCTTTTTCAAAATATGGAGAAGTTGTTGATGCTAGGATAATTATGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTTATTACATACACTTCGGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGTCAGGATCTTCATGGTCGCCGGATTAGGGTGAATTATGCTAATGAAAGGCCTCTGGATATGATGGAAGTGCCGTGGATGGTGGTGTTAGGTACAGGTACTGGCACCAGCTTTGCTGATGGCTATGATGGAAGTGGGGGGTCGGAATTTGGCAGCAGTGGCCAATTAGATAGCAAAGCAAGCAGCAATGGAGATGAGGATTTCGGAGATTACAGGGATGACAATGATGCAGATAATTTTGCCAAAAGGGCTTGA | 567 | 0.4533 | MAFFGRMGNLLRQAASRQVSLELRSSPSFFQAIRCMSSAPSTKLFIGGVSYSSDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDLHGRRIRVNYANERPLDMMEVPWMVVLGTGTGTSFADGYDGSGGSEFGSSGQLDSKASSNGDEDFGDYRDDNDADNFAKRA | 188 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo4g01227 | 188 | SMART | rrm1_1 | 43 | 116 | IPR000504 | GO:0003723 | |
Pumo4g01227 | 188 | MobiDBLite | consensus disorder prediction | 152 | 166 | - | - | |
Pumo4g01227 | 188 | MobiDBLite | consensus disorder prediction | 145 | 188 | - | - | |
Pumo4g01227 | 188 | Gene3D | - | 31 | 182 | IPR012677 | - | |
Pumo4g01227 | 188 | SUPERFAMILY | RNA-binding domain, RBD | 38 | 126 | IPR035979 | GO:0003676 | |
Pumo4g01227 | 188 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 42 | 120 | IPR000504 | GO:0003723 | |
Pumo4g01227 | 188 | FunFam | Glycine-rich RNA-binding protein 3, mitochondrial | 12 | 152 | - | - | |
Pumo4g01227 | 188 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 44 | 114 | IPR000504 | GO:0003723 | |
Pumo4g01227 | 188 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 15 | 166 | - | - | |
Pumo4g01227 | 188 | MobiDBLite | consensus disorder prediction | 167 | 188 | - | - | |
Pumo4g01227 | 188 | CDD | RRM2_NsCP33_like | 43 | 118 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo4g01227 | Pumo-Chr4 | 15593903 | 15596509 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo4g01227 | 41 | 122 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 35.366 | 3.01e-12 | 62.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo4g01227 | K12741 | - | gmx:100782808 | 229.18 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo4g01227 | 4 | 15593903 | 15596509 | Pumo4g01227 | 4 | 15593903 | 15596509 | ECH |