Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01223 ATGGCCGCCAAAACGGTAACCCCCGACGCCGTTTCGACCCTCATCGCAAACCCTTCCCCCGATTTTGCGTCGGATCTCCCCGACATCGTCGTTCAAGTCCTCGATCTCAAACCGAGCGGCAACAGATACATGTTCACTGCTAATGATGGAAAAACGAAACTGAGAGGGCTTATTCCTGCGAATATGTGCTCTCAGGTGCTCTCCGGGAATATTCAAAACCTAGGTCTTATTCGCATCCTTGATTACACTCTCAACGAAATCCCCAATAAATTGGACAAATACCTTATTGTCATTAAATGTGAAGCGGTATCTCCCGCGCTTGAGATGGAGATAAAGAGTGAGGAATCTGGATCTGGGATTCTTTTGAAGCCCAAGGTAGAGGGTGGAGTGAAGAGTGAAGGTGCTGCTGCGATTCTTCTGAAGCCGAAGCAAGAAGTGGTGACAAAATCTGCTAATCAGATTCTACGCGAACAGCATGGAAATTCGGCTCCTGCTGCACGAATGGCCATGACGCGTAGGGTGCGTCCTCTTGTTTCGTTGAACCCTTATCAGGGTAATTGGACGATAAAGGTTAGCGTTACAAGCAAAGGGAACATGCGTACCTATAGGAATGCTAGGGGTGATGGTTGTGTCTTCAATGTTGAATTGACGGATGAAGATGGTACTCAGATTCAGGCAACCATGTTTAATGATGCTGCGAGGAAATTTTTTGACAAATTTGTTCTGGGAAAGGTTTACTATATTTCAAAGGGGACTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTGCAAAACGATTATGAAATGACTCTAAATGAGAATTCTGAAGTGGAAGAGGTGGTGGGTGAAGCGAGTTTTGTTCCAGAAACAAAATTTAACTTTGTGCAGATTGATCAGCTGGGTCCTCATGTCAATAAGTCTGAACTTGTGGATGTTATTGGAGTTGTTAAGAATGTGTCTTCAACAATGAGCATTCGTAGGAAGAGCGACAATGAAAGTATTCCAAAGCGTGACATTACTATTGCTGATGAAACGAAGAAGACAGTAGTTGTGTCCTTGTGGAATGATCTTGCAACTAACACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAGGGTTGGGGACTTCCAAGGTGTTTCTCTGTCAACTATAAGCAGAAGTGTGGTTCTGGTAAATCCAGACATACCTGAAGCAAAGAAACTCAGAAGCTGGTATGATTTTGAAGGCAAAGATGCTGCAATGGACTCTGTAGGCTCTGGTTCAAGTCCAACATCTAACAATGGAATTAGATCAGTCTACAGTGATCGTGTTTCGCTTTCTCACATAACCTCAAACCCATCATTGGGGGATGGCAAGCCTGCATTTTTCAGTCTTAGAGGATATGTAAGCTTCATAAGGCCTGATCAGGCAATGTGGTACCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAGCGTTGGTTCTGGATATTGGTGCGAAGGATGCCAGAAAAGTGATGAACAGTGCAGTTTAAGGTATATTATGGTTGCCAAGGTTTGTGATACAAGTGGTGAGGCTTATATCTCTGTCTTTAATCAGGAAGCTGAGAAGATCGTTGGGTGCTCTGCTGATGATCTAGATAACCTTAAATCACAAGAGGGAGAAGATAGTCCTTATCAGTTGACATTGAAGCAAGCTACGTGGGTTCCACATCTTTTTCGGGTTAGTGTTACTCCGAACGAGTATAATGGTGAGAAGCGACAAAGGATAACAGCTCGGGCAGTTGTTCCTGTTGACTTCGCTGCTGAGTCAAGGATTATGCTGGAAGAGATATCAAAGATGAGAGCATAA 1860 0.4349 MAAKTVTPDAVSTLIANPSPDFASDLPDIVVQVLDLKPSGNRYMFTANDGKTKLRGLIPANMCSQVLSGNIQNLGLIRILDYTLNEIPNKLDKYLIVIKCEAVSPALEMEIKSEESGSGILLKPKVEGGVKSEGAAAILLKPKQEVVTKSANQILREQHGNSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYRNARGDGCVFNVELTDEDGTQIQATMFNDAARKFFDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVVGEASFVPETKFNFVQIDQLGPHVNKSELVDVIGVVKNVSSTMSIRRKSDNESIPKRDITIADETKKTVVVSLWNDLATNTGQELLDIVDKSPVVAIKSLRVGDFQGVSLSTISRSVVLVNPDIPEAKKLRSWYDFEGKDAAMDSVGSGSSPTSNNGIRSVYSDRVSLSHITSNPSLGDGKPAFFSLRGYVSFIRPDQAMWYRACKTCNKKVTESVGSGYWCEGCQKSDEQCSLRYIMVAKVCDTSGEAYISVFNQEAEKIVGCSADDLDNLKSQEGEDSPYQLTLKQATWVPHLFRVSVTPNEYNGEKRQRITARAVVPVDFAAESRIMLEEISKMRA 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01223 619 CDD RPA1_DBD_A 176 279 - -
Pumo4g01223 619 Pfam Replication protein A OB domain 303 401 IPR031657 -
Pumo4g01223 619 SUPERFAMILY Nucleic acid-binding proteins 175 281 IPR012340 -
Pumo4g01223 619 CDD RPA1_DBD_B 309 415 - -
Pumo4g01223 619 PANTHER REPLICATION FACTOR A 1, RFA1 187 580 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pumo4g01223 619 FunFam Replication protein A subunit 286 425 - -
Pumo4g01223 619 SUPERFAMILY Nucleic acid-binding proteins 6 108 IPR012340 -
Pumo4g01223 619 Gene3D - 428 617 IPR012340 -
Pumo4g01223 619 Pfam OB-fold nucleic acid binding domain 188 273 IPR004365 GO:0003676
Pumo4g01223 619 Pfam Replication factor-A protein 1, N-terminal domain 6 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pumo4g01223 619 Pfam Replication factor-A C terminal domain 464 609 IPR013955 -
Pumo4g01223 619 CDD RPA1_DBD_C 448 616 IPR047192 -
Pumo4g01223 619 FunFam Replication protein A subunit 173 282 - -
Pumo4g01223 619 Gene3D - 287 427 IPR012340 -
Pumo4g01223 619 Gene3D - 5 113 IPR012340 -
Pumo4g01223 619 FunFam Replication protein A subunit 430 617 - -
Pumo4g01223 619 NCBIfam replication factor-a protein 1 (rpa1) 25 616 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pumo4g01223 619 FunFam Replication protein A subunit 5 115 - -
Pumo4g01223 619 SUPERFAMILY Nucleic acid-binding proteins 292 419 IPR012340 -
Pumo4g01223 619 Gene3D - 173 281 IPR012340 -
Pumo4g01223 619 SUPERFAMILY Nucleic acid-binding proteins 443 617 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01223 Pumo-Chr4 15577059 15580394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01223 5 616 Core DNA Replication Machinery Family AT5G08020 67.700 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01223 K07466 - gmx:100777091 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01223 4 15577059 15580394 Pumo4g01223 4 15577059 15580394 ECH