Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01215 ATGCTGAAAAGCTTAGAACATTTGGCACACAGCATCCACACTTTCCTCTCTCACATCGGGTCGGTGAGGAGATCGAAAAGGTTAGTTTTATTGGATGATATCAAGAAGAAAATTTATGAGACAAGTAGCATGATGATTAATGAAAGTTCAAGTAAAGTTCATCAAGCGAATCAACAAGAGGGTGATGATAACATTAAAATTGAGAAGCTCTCAAAGGCACCCTCGACCTCAAGATCATGGTCAGCATTCAGAAATCCAAGAATTGTGCGAGTCTCACGTTCTTTGGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATTAGGGGACTGAGGGACCGAAGGATTAGACTGTCTGTTCCCACAGCAGTTCAGTTATATGAACTTCAAGACAAGCTTGGACTCAACCAACCTAGCAAGGTGGTAGATTGGTTGCTTGAAGCCACCAAATCTGATATTGATAAGCTTCCACCACTTCAATTTCCTCACTGTTTGGCTCAGTTTCACCAACAAACCCTACTGCCAGGTACCTCTCAGTTTTCTCTTGGAGGCTTCTATGATGCTGCTGCTGCTAATTCCACTTTTATAAAGGATGGGGGAAATCAAAACCTCATGGCAAAGTCAACAAGGTATTGGGATATAGATTCACTAAATAATGGTAAGGAGTTAGCTGAAAGTGTGTCAATCTCCCAAAAAGGAAAGTGCAGTTGGATCAAAACAAATGAACAAAAAAATCATCAAGATGGAATTGGTGGTACTGGTAGTAGTACTCATAATAGAGAGGATTCTTCAGCTCATAATTATAAGCTCTTCCCCATTGGGAGTACTAATAACTCTTATTTACCTGCTGGTTTGTTAAACAATGGCATGACACATAACTCCTACCACCATTCTGAGCCTTCAAGTCTATCTTTATCCCACTTTGGAAGCCATGGATTGTTTCCTTCCTATCCAAGCAGTGGCAGTGGCAGTGGCAGTGGTGTGCAGTTTTCATCTTCTAATTTCTCTGGAGCATCTGGTCCCCAATTACTTTTTTGTCCACCTTCTGCTACACCATCTGCTTTTTACTCAGTGGAAAGTGATCCAAGACAATCCAACAATCTTCAGATCTTTAGCTCAAGTTCCCAAGTCATGATGCCTCATCCTCTCATCCAATCTCTTCATTCAACCAATTCACCTCTTAGACGCCTTCCAACATCATTCAGCTCCAAGCTTCTTGATTCAGATAATAATGATCGTAGCCAACCAAATAAGGGTAGTAGTACTCGTTCTTGA 1272 0.4143 MLKSLEHLAHSIHTFLSHIGSVRRSKRLVLLDDIKKKIYETSSMMINESSSKVHQANQQEGDDNIKIEKLSKAPSTSRSWSAFRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAVQLYELQDKLGLNQPSKVVDWLLEATKSDIDKLPPLQFPHCLAQFHQQTLLPGTSQFSLGGFYDAAAANSTFIKDGGNQNLMAKSTRYWDIDSLNNGKELAESVSISQKGKCSWIKTNEQKNHQDGIGGTGSSTHNREDSSAHNYKLFPIGSTNNSYLPAGLLNNGMTHNSYHHSEPSSLSLSHFGSHGLFPSYPSSGSGSGSGVQFSSSNFSGASGPQLLFCPPSATPSAFYSVESDPRQSNNLQIFSSSSQVMMPHPLIQSLHSTNSPLRRLPTSFSSKLLDSDNNDRSQPNKGSSTRS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01215 423 MobiDBLite consensus disorder prediction 387 423 - -
Pumo4g01215 423 MobiDBLite consensus disorder prediction 239 262 - -
Pumo4g01215 423 Pfam TCP family transcription factor 97 170 IPR017887 -
Pumo4g01215 423 ProSiteProfiles TCP domain profile. 97 155 IPR017887 -
Pumo4g01215 423 MobiDBLite consensus disorder prediction 239 260 - -
Pumo4g01215 423 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 53 380 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01215 Pumo-Chr4 15520163 15522128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01215 81 250 TCP Transcription Factor Family AT5G60970 50.857 1.23e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo4g01215 TCP 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01215 - - gmx:102665855 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01215 4 15520163 15522128 Pumo10g02242 10 31210610 31212137 PCT