Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01205 ATGGAATCTTGGAGCTATGTCCCTGAAGAAAAGGAGTGTGTCTCCAATGAGTCACTCTCGCCTCCCAACACTCTCGGGAGGAGTAAAAATTCATTATTGGGCTGGGAACTCAAAACCCCATGTGGTTTTTCCAACGACATGTTGGGTTTGGGTCAGCACAGCATTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCTGAAATGTTGGGGAAACACTTGTCCGATGATCTAATTGGGAGTGTTCCAACCAGAAAGGTGGATGGTAGTAACAGTGACAGAATCACTGGCACTGTTGTGGATGCCCCAAGTGGGTTTTCTCAAAGAGGGGACTCAAATTCCCTCATTGATTTGAAGCTGGGTCGATTTGCTGACCATGGAGATTTCACTGATCCGGCGTTTTCCAAAGTTTTGTCTTCTTCTGAGTCATCAACGCCTCCTAAGAGAGTGAGAGCTTCGGGGTTGCACTCTCAGACTGCATTTTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTGCAAGGACTACCACAAGAGGCACAAGGTGTGTGAGGTTCACTCCAAGACTGCCATTGTTATAGTCAATGGCATTGAGCAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGAAGCTGCCGAAAACGCCTTGCAGGTCATAATGAGCGTAGAAGAAAACCGCAAATGGGTATTCACCCAGGAAAGTCTGGGAGGTTGCTTCAGCCATGTGGGGATAGCAGATTCCAGGGATCCATGCTAACATCATCTTTTATCCGCCCAGAGATGCTTCCTAGTGGGGTCATGTGTTCCGAGAAATATGGTATGAGTGACTTCTGGAGACCTATCAAAGCAGAACAAGGGGCTGGTTTTAGGAATCTTTCTTCTATGCCTGTAACCAATGGGCATCCGCAGTCAAGATCTTTATTTCCATCATATAGTGGAAAACAATTTCCTTTTCTTCATGAAAACGGTGCTACATCCACCACAGGAAGCATCTTCTGTGAGAGCAATAACCACTATCCACCTGCCCTTGGGCCCCAAAATTCTGGGCTGAGGCCACTATTCCAGGACACAGTAGGTAATGAGGACTTCAATGTTTTTGATACATCATCAACTGTTCAAGGATTATCGGGGATTTCAGACTCTTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCGGGAATTCCCTTGGGTCACTCCTTGGTTATTCCAAGCAGTCATAGCCATCACTACAACATGAGTCAGGTCTCTGAAAAGATAGGAATAAGCTCACAGACTTCTTCAAGCCGAGTTTCAGATAGTTTTCCATCAGAAATAAATCATCCAGATGGAAGTAATCTGAGTCCTGTATTAATATCAGACAATAATGATATTGTAAACTTTGATATGGCAGATGGCATCTTCCAAGGTTCAGATTTCGTGAATGTGAAAGATCGTCTTTCTGGCAAAGATGGTGCAACCATTGACTTGCTACAATTGTCATCGCAGCTTCAGCGAGTTGAGCATGAGAGGCAATCCTTGCAGGTGAAGCAAGAGAATGATTCTTCTTGCACTCTGCGGATTACATAA 1617 0.4471 MESWSYVPEEKECVSNESLSPPNTLGRSKNSLLGWELKTPCGFSNDMLGLGQHSIENQGFEELGFPEMLGKHLSDDLIGSVPTRKVDGSNSDRITGTVVDAPSGFSQRGDSNSLIDLKLGRFADHGDFTDPAFSKVLSSSESSTPPKRVRASGLHSQTAFCQVYGCNKDLSSCKDYHKRHKVCEVHSKTAIVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHPGKSGRLLQPCGDSRFQGSMLTSSFIRPEMLPSGVMCSEKYGMSDFWRPIKAEQGAGFRNLSSMPVTNGHPQSRSLFPSYSGKQFPFLHENGATSTTGSIFCESNNHYPPALGPQNSGLRPLFQDTVGNEDFNVFDTSSTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPLGHSLVIPSSHSHHYNMSQVSEKIGISSQTSSSRVSDSFPSEINHPDGSNLSPVLISDNNDIVNFDMADGIFQGSDFVNVKDRLSGKDGATIDLLQLSSQLQRVEHERQSLQVKQENDSSCTLRIT 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01205 538 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Pumo4g01205 538 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 102 524 IPR044817 GO:0003677
Pumo4g01205 538 Gene3D - 152 222 IPR036893 GO:0003677|GO:0005634
Pumo4g01205 538 SUPERFAMILY SBT domain 159 238 IPR036893 GO:0003677|GO:0005634
Pumo4g01205 538 Pfam SBP domain 161 234 IPR004333 GO:0003677
Pumo4g01205 538 Coils Coil 506 526 - -
Pumo4g01205 538 MobiDBLite consensus disorder prediction 438 458 - -
Pumo4g01205 538 FunFam Squamosa promoter-binding-like protein 14 152 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01205 Pumo-Chr4 15377458 15381674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01205 115 276 SBP-box Gene Family AT1G69170 57.407 1.63e-55 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo4g01205 SBP 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01205 - - gmx:100812110 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01205 4 15377458 15381674 Pumo4g01205 4 15377458 15381674 ECH