Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01203 ATGGGAAGAGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATTAACAGGCAAGTCACATTTGCCAAGAGGAGAAATGGGTTGCTCAAGAAGGCTTATGAGCTCTCAGTACTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCAGCAGCACCTCAAGTATGATGAAAACACTGGAGAAGTACCAGAAGTACAGCTACAGTGCACTGGAGACCACCCGACCAATTAACGACACTCAGAACTACCAGGAATATTTGAGATTAAAAGCAAGGGTAGAAGTCTTGCAACGTTCTCAAAGGAACCTACTCGGGGAAGATCTTGCCCAAATGAATACAAGTGAGCTAGAGCAGCTTGAGAATCAACTGGAAGCAGCACTGAAGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTGCTGATCTTCACCACCGGGAAACATTGCTTATTGAAACTAATAATGTGTTAAGGAGTAAGCTGGAAGAAACTAATGACTCACAAGTTCAAGTAAGTCTAGCTTTGGAAGCTGGAGGGTCTAACATCCATTACACCAACTTTCCACCTCAATCAGAGGGGTTCTTCCACCCGTGGGAGTGA 627 0.4434 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKTLEKYQKYSYSALETTRPINDTQNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTSELEQLENQLEAALKNIRSTKTQFMLDQLADLHHRETLLIETNNVLRSKLEETNDSQVQVSLALEAGGSNIHYTNFPPQSEGFFHPWE 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01203 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo4g01203 208 FunFam MADS-box transcription factor 1 13 88 - -
Pumo4g01203 208 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pumo4g01203 208 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Pumo4g01203 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo4g01203 208 Coils Coil 116 143 - -
Pumo4g01203 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Pumo4g01203 208 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pumo4g01203 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo4g01203 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo4g01203 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo4g01203 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo4g01203 208 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo4g01203 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo4g01203 208 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01203 Pumo-Chr4 15303348 15310546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01203 1 208 MADS-box Gene Family AT5G15800 61.502 1.29e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo4g01203 K-box 9.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01203 K09264 - gmx:100804810 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01203 4 15303348 15310546 Pumo10g02262 10 31566491 31578624 ECH
Pumo5g00676 5 13175548 13181244 Pumo4g01203 4 15303348 15310546 ECH
Pumo4g01203 4 15303348 15310546 Pumo4g01203 4 15303348 15310546 ECH