Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01202 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTGACGTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCGCGCGAGATCTCTGTGCTTTGCGATGCTGATGTGGGGCTCATAGTCTTCTCCACTAAAGGCAAGCTTTTCGAGTACTCCACCGAACCTTGTATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCGTATGCGGAGAGACAGCTTGTTGGAGATGATCAAGCACCAAATGAAAACTGGGTTATAGAACACGAAAAGCTCAAGGCTAGGGTGGAGGTACTACAGCTAAATCAAAGAAATTTTATGGGAGAAGAGCTGGAAAGCTTAAATCTCAGAGGACTTCAGAATTTGGAGCACCAACTTGATTCCGCTCTTAAACACATTAGATCACGAAAGGTAAAACTATATATGCAACTTAGAGTGTTTTGGCGATGTCATAAATCATTAAACAAATATGGTTGTTATGAGTTTTTATTTGTACATTTCAATGATAGAGGTGTCCAATATATCCAAATTATAAGGGCAACAAAATCCTAA 570 0.407 MGRGRVELKRIENKINRQVTFSKRRSGLLKKAREISVLCDADVGLIVFSTKGKLFEYSTEPCMERILERYERYSYAERQLVGDDQAPNENWVIEHEKLKARVEVLQLNQRNFMGEELESLNLRGLQNLEHQLDSALKHIRSRKVKLYMQLRVFWRCHKSLNKYGCYEFLFVHFNDRGVQYIQIIRATKS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01202 189 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pumo4g01202 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo4g01202 189 Coils Coil 88 108 - -
Pumo4g01202 189 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo4g01202 189 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo4g01202 189 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Pumo4g01202 189 ProSiteProfiles K-box domain profile. 88 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo4g01202 189 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo4g01202 189 Pfam K-box region 85 149 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo4g01202 189 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo4g01202 189 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo4g01202 189 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo4g01202 189 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 147 - -
Pumo4g01202 189 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Pumo4g01202 189 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01202 Pumo-Chr4 15282889 15297133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01202 1 146 MADS-box Gene Family AT1G26310 72.297 2.52e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo4g01202 K-box 4.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01202 K09264 K09260 gmx:100798351 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01202 4 15282889 15297133 Pumo10g02262 10 31566491 31578624 PCT