Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01192 ATGGAGCTTCCTCAAGCGCGTCCACTTGGAACCGAAGGGAGGAAACCGACGCATGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGATCCAAGGCCACCTTCTCAAGGAAGTTACCTCAAGACTCATGATTTCTTGCAGCCACTAGAACGGCTAGAAACAAAAACTAGTGCCAAGGAAGAAGCCACAGATGAAATATCGTCGGTGGTTCAAAAGCCACCACCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACAGTATTAACCACATTTCATATGTTAATAATAATAATAATAATCAAAGGGTTCCGAAACCAGAGACGTCCCTTTTTGTGCGTCAAGCAACTAGTACGGATAGGAATGATGACAACTCCAACTGCAGTTCCTATACTTCAAGTGGTTTCACTTTGTGGGAGGAGTCATCGGGGAAGAGGGGAAAAACAGGGAAGGAGAATAATGCGGGCGATAAACCCTCTCTAGGAGAGTCTGCGGCAAAGCTAGGGCAGTGGACATCAACGGAGCGGACGTCACAGTCGTTTTCTAACAATCGTCACGGCAGCTTCAGCTCTCGCTCTTCATCTCAGACGACTGGGCAGAAGAACCAGAGTTTTATTGAAATGATGAAGTCTGCAAGGGATAGTGCCCAGGATGAAGTGCTAGAAAACGAAGAAACATTTTTTCTCAAGAAAGAACCCTCAAATACCCAAAGAGAACTGAGGGTGAAAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACTCCAAGATCAAAACACTCTGCGACAGAACAGCGAAGAAGGAGCAAAATTAATGACAGATTCCAAATGCTACGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTAGAGGTCATTGAGTATATTCATTTTTTACAAGAGAAGGTGCATAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCCAGAAAAATTGATGCCATGGAGAAATCATGACAAACCAACAGAAAGTTTTCAACCTCATGACACCGATAACGGGTCAAGTCCATCTCCAACACTGCTGTTTGCCTCAAAGGTGGACGAGAAAAACATCACCATCTCCCCAACAATTGCTGGGAGTACCCAGAATGTAGAATCTGGCTTGAGCACAGCAACTACCTCCAAGACAATGGATCATCAGGCTGGAATAATGAACAGGGCTTTTCCACTTCCTATTTCTTCACAGCTAAATTTCTTCACTCCAACCCAAACCAGTGGTCCAGGTGGAGTAGTGTCTCAGCTCACACATAGATTGGCATCTGATGCTGAGAACACCAAATATCAACCTTCAGTAGAATGTCAGACTATGGCTGCTACCAATGAAAAACTGAAAGAGAAAGAACTCACTATTGAAGGTGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGCATACCCTTACACATGCCCTACAAAATTCTGGGGTGGATTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCAAACATCAGACCAACTGTACCAGTGTCAGTGTGTGGTGCTAAGGATGGAGAAGTTCCTTCTAACAATCAAAAGATGATGCGCTCTAGAGTTGCTAGCTCTGGGAAGTCTGACCAAGCAGTTAAGAAGCTAAAGACGTGCAGAAGTTAA 1683 0.4409 MELPQARPLGTEGRKPTHDFLSLYSNSTAQQDPRPPSQGSYLKTHDFLQPLERLETKTSAKEEATDEISSVVQKPPPSVEHLLPGGIGTYSINHISYVNNNNNNQRVPKPETSLFVRQATSTDRNDDNSNCSSYTSSGFTLWEESSGKRGKTGKENNAGDKPSLGESAAKLGQWTSTERTSQSFSNNRHGSFSSRSSSQTTGQKNQSFIEMMKSARDSAQDEVLENEETFFLKKEPSNTQRELRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEPEKLMPWRNHDKPTESFQPHDTDNGSSPSPTLLFASKVDEKNITISPTIAGSTQNVESGLSTATTSKTMDHQAGIMNRAFPLPISSQLNFFTPTQTSGPGGVVSQLTHRLASDAENTKYQPSVECQTMAATNEKLKEKELTIEGGAISISSVYSKGLLHTLTHALQNSGVDLSQASISVQIELGKQANIRPTVPVSVCGAKDGEVPSNNQKMMRSRVASSGKSDQAVKKLKTCRS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01192 560 SMART finulus 264 314 IPR011598 GO:0046983
Pumo4g01192 560 MobiDBLite consensus disorder prediction 1 79 - -
Pumo4g01192 560 Gene3D - 256 329 IPR036638 GO:0046983
Pumo4g01192 560 MobiDBLite consensus disorder prediction 142 205 - -
Pumo4g01192 560 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 329 IPR036638 GO:0046983
Pumo4g01192 560 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 557 IPR044295 GO:0003700|GO:0006351|GO:0046983
Pumo4g01192 560 MobiDBLite consensus disorder prediction 169 205 - -
Pumo4g01192 560 CDD bHLH_AtBIM_like 257 333 - -
Pumo4g01192 560 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 308 IPR011598 GO:0046983
Pumo4g01192 560 MobiDBLite consensus disorder prediction 48 68 - -
Pumo4g01192 560 MobiDBLite consensus disorder prediction 20 44 - -
Pumo4g01192 560 MobiDBLite consensus disorder prediction 229 273 - -
Pumo4g01192 560 MobiDBLite consensus disorder prediction 533 551 - -
Pumo4g01192 560 FunFam BHLH domain class transcription factor 256 328 - -
Pumo4g01192 560 Pfam Helix-loop-helix DNA-binding domain 260 309 IPR011598 GO:0046983
Pumo4g01192 560 MobiDBLite consensus disorder prediction 526 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01192 Pumo-Chr4 15181312 15191329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01192 1 512 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 47.417 1.97e-127 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g01192 HLH 4.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01192 - - gmx:100808016 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01192 4 15181312 15191329 Pumo4g01192 4 15181312 15191329 ECH