Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01190 ATGAGGAAGCGGTCGTTTGTTGTGGGATTTGCTACGTCCGAGCGTGGGGTTTCGATTGCAGGGGAAATCGATTGCTGCAATCACTACTTTTGCTTCGTTTGCATCATGGAGTGGGCCAAGCATGAGTCTCGATGCCCAATTTGTCGCCAGAGATTCTCCAACGTTCGCAGGCTCCCTATGCATGGCGTCTTTTCTTCCTCTCGGGACGTTAAGGTCCCTCATCGTGACCAGGTTTATCATCCTCATGGAAATATGGCAACTGGTCCTGCTGAGTCTTATGCTGAAACCAAATGTAGTGTCTGTCATGCTGGGACAGATGAACATCTTCTACTACTTTGTGATCTTTGTGATACTGCTTCACACACATACTGTGTTGGCCTGGGCTATACTATTCCTGAAGGTGATTGGTTTTGTCACGATTGTGCTATTTCCCGGGAGACCAATATCAATGAAGAATCAGACCAACAAAATGTTGCGTCAACAGCGGAGCCAAGTGTAACCATCGATATCTTTGATATTGTGAGGGAAACAGGCAGCCGGGTGGTTAGGAGACCAAGGGCATCTCCTTTACAACAGAACCTGTCATCTCCTTCTGTTATTCCTTTACCTGATAGGTTAAGTAGATTAAAAGGAAAAAGTCCTGTCACAGGTGTCTGTCATATGCAGCGTAATATAAAGGCATTTCGTGAAAATTGGAATGCTTTGAGAAGTGGTTCATGCCAGTTCGGTTCCAATTCATTTCAATCTGGCAGCACAGTTAGTCAAACACAAGATTCTAGCTCCTTATCACATAGCAAATTAGATGATTTGCGTCCTATGGCTTCCACAAGCCTTCAACAATCCACTGTCCAAGGTGGTCCTTCTAACAAAATGTTGAATGAGAGAGTCTTTAAAGATGTTGACAAGGCATGGAAAATGATGGACAGGGCAAAGAGGATCCAACTGCCTCATCATAGAACATGCAGCATTCCGCAGGGAGCAGATAAACCCTCATGCAGTGGAGGAGCTAGAAAAATATCATTTGCACATTGTAACTTTCCAGAACTGAAAGATCAACATTCCAAAGCATTAGACTTAAGGAACACTAAAAAAGAGAAGCAGTGTGACTATTCTAGGCTCGACCAGAATTTGGAAAATCGCTCAACTCTGAAGTTGGAAGAGAAAAAGCAAAGTAGGGTTACATGTGAGAAGATGATACATGTGAGGGACCACTACTACTCATTCAAAAGGATATTGTGA 1239 0.4366 MRKRSFVVGFATSERGVSIAGEIDCCNHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPHRDQVYHPHGNMATGPAESYAETKCSVCHAGTDEHLLLLCDLCDTASHTYCVGLGYTIPEGDWFCHDCAISRETNINEESDQQNVASTAEPSVTIDIFDIVRETGSRVVRRPRASPLQQNLSSPSVIPLPDRLSRLKGKSPVTGVCHMQRNIKAFRENWNALRSGSCQFGSNSFQSGSTVSQTQDSSSLSHSKLDDLRPMASTSLQQSTVQGGPSNKMLNERVFKDVDKAWKMMDRAKRIQLPHHRTCSIPQGADKPSCSGGARKISFAHCNFPELKDQHSKALDLRNTKKEKQCDYSRLDQNLENRSTLKLEEKKQSRVTCEKMIHVRDHYYSFKRIL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01190 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 60 IPR013083 -
Pumo4g01190 412 MobiDBLite consensus disorder prediction 246 267 - -
Pumo4g01190 412 SMART PHD_3 97 142 IPR001965 -
Pumo4g01190 412 Pfam PHD-finger 98 142 IPR019787 -
Pumo4g01190 412 ProSitePatterns Zinc finger RING-type signature. 26 35 IPR017907 -
Pumo4g01190 412 Pfam Ring finger domain 25 49 IPR001841 -
Pumo4g01190 412 ProSiteProfiles Zinc finger PHD-type profile. 95 144 IPR019787 -
Pumo4g01190 412 MobiDBLite consensus disorder prediction 246 263 - -
Pumo4g01190 412 FunFam PHD and RING finger domain-containing protein 1 isoform A 84 163 - -
Pumo4g01190 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 166 IPR013083 -
Pumo4g01190 412 SUPERFAMILY RING/U-box 26 56 - -
Pumo4g01190 412 PANTHER F18C1.6 PROTEIN 11 383 - -
Pumo4g01190 412 ProSiteProfiles Zinc finger RING-type profile. 26 49 IPR001841 -
Pumo4g01190 412 SUPERFAMILY FYVE/PHD zinc finger 90 143 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01190 Pumo-Chr4 15149004 15151723 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01190 89 145 C2H2 Transcription Factor Family AT3G01460 39.655 1.16e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo4g01190 PHD 9.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01190 - - gmx:100808541 683.33