Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01188 ATGGCAGATGTAACCACCTACCTCCGCCACCACCCCGACGACGACGACCAAACCCTAATCCCCTTCCCTTATTGGGATTTGGACTTCGATTTCGACCCCGAATTCCCCCTCACCACCGACCGCGAAAACCAGGTCAATTTCGTCATGGATCTCTTCCACCAGCGCGTGGAGCAGTCGCAACTCACCGATCCCCTCTCCAACGACGCCGTTTTCGGCGTCATCGACGGCCTCGTCGACTTAGGCTTCCCCGCCGACGACGACTTCTTCGTCGGACGGAGATTCTCCGTCGGATCCGACTCCGACGAAGAACACTCTCTCTCGCACTCGCACGCGCGCGCGCGCGCGGGGAACAATAACGACGACGGCGTCCTCGGGATCTGCGCGCACTCGGAGGAAGAGTACAACGAAAATGGCGACGTTTCGAGCATCCCTTTGTGCTGGGACGCGCTGCAATTGGACGACAACAGAGACAACAGTTACGAGGATTTCGAGTGGGAGGAAGTGGTGGACGAGAGAGAGGTTCTGAGCATGCTCGACGACACCTCCGTCTCCGTCTCCGTCGGAATCGAAGAGGAAACCGAAGGAGAAGAAGAATTAGAAGCCAACAATTTGGAGTGGCAAGTTTTGCTAAACGCGAACAATTTAGAAGGAACAAATTCCGAGCCTTATTTCGGAGACAACGAGGATTTCGTTTACACTGCAGAGTACGAGATGATGTTCGGGCAATTCAACGACGATGCGTTTACTGGGAAGCCTCCGGCTTCCGCCTCCGTCGTTCGGAACCTTCCGTCGGTGGTTGTGACCGCTGCTGACGTGGCAAACGACAACGTCGTTTGCGCGGTTTGTAAAGAGGAGTTTGGCGTTGTGGAACGGGTGAAGGTGTTGCCGTGTTCGCATCGTTACCATGGGGACTGCATTGTGCCGTGGTTGGGGATAAGGAACACGTGTCCCGTTTGTCGCTATGAGTTTCCCACTGATGATGCTGATTATGAGCGGAGAAAGGCGCAGAGATCTGTTATGTGA 1023 0.5523 MADVTTYLRHHPDDDDQTLIPFPYWDLDFDFDPEFPLTTDRENQVNFVMDLFHQRVEQSQLTDPLSNDAVFGVIDGLVDLGFPADDDFFVGRRFSVGSDSDEEHSLSHSHARARAGNNNDDGVLGICAHSEEEYNENGDVSSIPLCWDALQLDDNRDNSYEDFEWEEVVDEREVLSMLDDTSVSVSVGIEEETEGEEELEANNLEWQVLLNANNLEGTNSEPYFGDNEDFVYTAEYEMMFGQFNDDAFTGKPPASASVVRNLPSVVVTAADVANDNVVCAVCKEEFGVVERVKVLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERRKAQRSVM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01188 340 ProSiteProfiles Zinc finger RING-type profile. 279 320 IPR001841 -
Pumo4g01188 340 SUPERFAMILY RING/U-box 261 326 - -
Pumo4g01188 340 SMART ring_2 279 319 IPR001841 -
Pumo4g01188 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 326 IPR013083 -
Pumo4g01188 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 176 324 - -
Pumo4g01188 340 FunFam E3 ubiquitin-protein ligase RING1-like 241 326 - -
Pumo4g01188 340 Pfam Ring finger domain 279 320 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01188 Pumo-Chr4 15141538 15143252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01188 142 326 C3H Transcription Factor Family AT5G60820 49.524 1.07e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01188 - - gmx:100794303 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01188 4 15141538 15143252 Pumo4g01188 4 15141538 15143252 ECH