Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01187 ATGGAATGCAATGAAGATGATGAACTCAATGCAACACCTTATGCTTCCTTAACACAGTGCCTTCACTATCCTTCTCGAACCCAGAAACCTTTCTTGACCTCAACAAACCTCCTGAACATGGAAACTGGTGAAGGCCATACTTTGACCCACATGGATCCACCTCATGGTTTGCATCATATTCCATTTTACTGCTCCCAACTGCACCTTCCTAGCAACAGCAACAACCCAATTCAAATCCCACTCCACAAACCCTCTCCCAACACATCATCAAACAGTAACAACAACAATTCTGATGAAGTAAAGGCTCTCCTTGATGACAGAAAGAAGAAGAGGATGTTCTCCAACAGAGAATCTGCTCGCAGGTCACGGATGCGAAAGAAGCAACAAATTGAAGTCCTGCAGTATCATGTGGATCATCTGCAGACATTAAACCATCAACTGTCCCAAAAGATCATTTACTTGTTGGAATGTAACCAACAAATCCACCAACAGAATGCTCAGCTAAAAGAGAAAGTTTCCTCTCTTCAGGCAGCACTCTCTGACTTCTTGGTCCCTGCTGGAAGTGCTGAGCAACCTCACCACATCCCCAATGGCTTCCTAGCTGAGCCTTCAACTCGACCAATTGCAAGTTCCAGAGCATAG 642 0.447 MECNEDDELNATPYASLTQCLHYPSRTQKPFLTSTNLLNMETGEGHTLTHMDPPHGLHHIPFYCSQLHLPSNSNNPIQIPLHKPSPNTSSNSNNNNSDEVKALLDDRKKKRMFSNRESARRSRMRKKQQIEVLQYHVDHLQTLNHQLSQKIIYLLECNQQIHQQNAQLKEKVSSLQAALSDFLVPAGSAEQPHHIPNGFLAEPSTRPIASSRA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01187 213 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 105 168 IPR004827 GO:0003700|GO:0006355
Pumo4g01187 213 Coils Coil 158 178 - -
Pumo4g01187 213 Gene3D - 106 181 - -
Pumo4g01187 213 SMART brlzneu 103 167 IPR004827 GO:0003700|GO:0006355
Pumo4g01187 213 MobiDBLite consensus disorder prediction 100 125 - -
Pumo4g01187 213 MobiDBLite consensus disorder prediction 74 125 - -
Pumo4g01187 213 Pfam bZIP transcription factor 106 165 IPR004827 GO:0003700|GO:0006355
Pumo4g01187 213 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 65 191 IPR044521 -
Pumo4g01187 213 CDD bZIP_plant_GBF1 108 156 IPR045314 GO:0003700|GO:0006355
Pumo4g01187 213 SUPERFAMILY Leucine zipper domain 107 158 IPR046347 GO:0003700|GO:0006355
Pumo4g01187 213 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 110 125 IPR004827 GO:0003700|GO:0006355
Pumo4g01187 213 MobiDBLite consensus disorder prediction 74 99 - -
Pumo4g01187 213 FunFam BZIP transcription factor 105 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01187 Pumo-Chr4 15138337 15138978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01187 105 210 bZIP Transcription Factor Family AT5G60830 54.630 2.32e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo4g01187 bZIP_1 1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01187 - - aprc:113874797 352.829