Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01176 ATGGAAAACATAGACACCTCAAAATCTTTACACCAATCTCAAAACCAAAACAAGAATCTTCCCTTGATGCCTATTGAAATAGACAAGTCCTATGAGAAGAGAGTCATAAAGGAAGATGGATTGCTGAGATCAAGGACTCCTCAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAGGCTGCCCTGGCTTATGACTGTGCTGCAAGGCTTCTCAGAGGGAGAAATGCCAAAACAAACTTTCCAAACCCTCATGAGGAAGATTGCAGCATTTTGGGTAACAATCCAAGGGCTTACCAACTTCTTAAGCATGCAGTCATGAAGAACCATCATGCACTTTCATCATCTCTTTATTCCTCAGTAATGCCTTGGAAAAACCAGATCATGATGAGAGACGAATTTGACACCCTTGTTGAGGAAACTATAGTTTGTTCCATTCCTGAACAAGGCTCTGGCTGTTGTGGAATTTCATTTGGAAGCTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTAAGTACTTCTCATGATGAAACCCCCTAA 552 0.4076 MENIDTSKSLHQSQNQNKNLPLMPIEIDKSYEKRVIKEDGLLRSRTPQKLRLWLGTFDKAEEAALAYDCAARLLRGRNAKTNFPNPHEEDCSILGNNPRAYQLLKHAVMKNHHALSSSLYSSVMPWKNQIMMRDEFDTLVEETIVCSIPEQGSGCCGISFGSSKVYSSVVVAPSLSTSHDETP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01176 183 CDD AP2 48 85 IPR001471 GO:0003700|GO:0006355
Pumo4g01176 183 MobiDBLite consensus disorder prediction 1 21 - -
Pumo4g01176 183 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Pumo4g01176 183 SMART rav1_2 42 90 IPR001471 GO:0003700|GO:0006355
Pumo4g01176 183 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Pumo4g01176 183 SUPERFAMILY DNA-binding domain 46 85 IPR016177 GO:0003677
Pumo4g01176 183 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 47 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01176 Pumo-Chr4 15034254 15034866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01176 48 94 AP2-EREBP Transcription Factor Family AT1G28360 65.957 3.29e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01176 K09286 - gmx:100807374 270.396