Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01174 ATGGCACAAGATACTGTTTCTGGTGTTGACTCACCTCGGCGACGTCTATTACGAGATCAGGTTCAAGTGGTTAAAAGAAAGGATTCTGATCGCTATGAAATTGTTCCTATCCAAGATTCTTTGTCATTCGAGAAAGGATTCTTCATATTTATTCGTGCATGCCAGTTGTTGGCTCAAAAGAATGATGGTATCATATTAGTAGGAGTTGCAGGTCCATCTGGAGCAGGGAAAACTGTTTTCACCGAGAAGGTCCTCAATTTTATGCCAAGCATAGCTGTCATAACAATGGACAATTATAATGATTCCAGTAGAATTATTGATGGAAACTTTGATGATCCTCGGTTGACAGATTATGATACCTTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGGACTGTTGAAGTCCCTAGCTCTCGTATTGTAATCATAGAAGGCATCTATGCCTTAAGTGAAAAATTACGACCTTTGCTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGATCTTGTCAAGCGTGTTTTGCGGGACATTCATCGTGCCGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTTTATCCTATGTATAAAGCTTTTATTGAGCCAGATCTCCAAACAGCGCATCTAAAAATTATTAACAAGTTTAATCCATTCTCTGGATTCCAGAATCCCACCTACATATTGAAGTCAGCAAGAGCTGTGACAGTTGATCAAATCAAGGCAGTTATTGCTGCAGAGCATACTGAAACCAAAGAGGAAACGTATGACATATTTCTTCTACCCCCTGGGGAAGACCCTGAAGCTTGTCAATCATATTTGAGAATGAGAAACCGTGATGGAAAGTACAATCTTATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAGGTCAGCGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGATACACAATTGCAGCTATCCTGAAAAGAAGCAGCCATGTCTTTCATGATGATAAAGTAACCATAAAAACTGATTGGCTAGAACAACTTAATCGCACATATGTTCAGGTGCAAGGGAAAGACAGAAACTATTGCAAATTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAGATTCAGCTAGAAAAGCTTGTAAACGATGTGATGGCATTGCCAGATGATCTTAGGACAAAACTCAGCATAGATGATGACTTGGTTTCTAGCCCCAAAGAAGCCCTTTCCAGAGCTTCTGCAGATAGGAGAATGAAGTATCTTAATCGTGGTATTTCACACTCGTATTCAACTCAAAGGGAAAAGATTCTACCTAAGCTGACTAAACTTGCTATAAATAACAGAAGATTCGATGGAAGAGCGCTAGAATCACCTGCACCAATTGCTAACCAAGGAGTCATCACTCAACTTTCTGATCAAATTTCCACATTAAATGAAAGAATGGATGAATTCACCTCCCGTATTGAAGAACTGAATTCAAAGTTTGCTATCAAAAAAGTGTCAGCCAGTCAACAAAACTTGGCTTCACAGGCTGAGGCCTGCAATGGCCCAGGCCCCACTTCCTTCTTTGTAACTGGACTTAGCAATGGTTCATTGACTGGATCATTGCTACCTAATTCTTCATCATCTTCTCAGTTGGCTAAAGAGTCTCCCCTGATGGAAGAGGTATTGGTTATTGCTCGAGGACAACGTCAAGTCATGCATCAACTAGACACTCTGAGCAATCTGTTGCATGAATACTTTGGAGAAAGGTCACGCCTGGGAAGACCAGATCAGACAGCTAGAATGCGTGAAGCTGAATCTGTTGCCATTCCCCTGGTTCTGACTCTGGCCATTGGTGCTGTTGGTGTGCTTTTGTTCAGAGGTTTGACATCCCAAAAATAA 1980 0.4126 MAQDTVSGVDSPRRRLLRDQVQVVKRKDSDRYEIVPIQDSLSFEKGFFIFIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKAGKPVQVPIYDFKSSSRIGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIHRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHLKIINKFNPFSGFQNPTYILKSARAVTVDQIKAVIAAEHTETKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVTIKTDWLEQLNRTYVQVQGKDRNYCKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLRTKLSIDDDLVSSPKEALSRASADRRMKYLNRGISHSYSTQREKILPKLTKLAINNRRFDGRALESPAPIANQGVITQLSDQISTLNERMDEFTSRIEELNSKFAIKKVSASQQNLASQAEACNGPGPTSFFVTGLSNGSLTGSLLPNSSSSSQLAKESPLMEEVLVIARGQRQVMHQLDTLSNLLHEYFGERSRLGRPDQTARMREAESVAIPLVLTLAIGAVGVLLFRGLTSQK 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01174 659 CDD UMPK_like 66 238 - -
Pumo4g01174 659 Pfam Phosphoribulokinase / Uridine kinase family 67 235 IPR006083 GO:0005524|GO:0016301
Pumo4g01174 659 Gene3D - 65 245 IPR027417 -
Pumo4g01174 659 SUPERFAMILY CYTH-like phosphatases 259 406 IPR033469 -
Pumo4g01174 659 Gene3D - 253 407 - -
Pumo4g01174 659 Pfam CYTH domain 271 403 IPR023577 -
Pumo4g01174 659 PRINTS Uridine kinase signature 131 146 - -
Pumo4g01174 659 PRINTS Uridine kinase signature 64 81 - -
Pumo4g01174 659 PRINTS Uridine kinase signature 223 236 - -
Pumo4g01174 659 PRINTS Uridine kinase signature 187 197 - -
Pumo4g01174 659 PANTHER URIDINE KINASE 17 422 - -
Pumo4g01174 659 ProSiteProfiles CYTH domain profile. 247 409 IPR023577 -
Pumo4g01174 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 235 IPR027417 -
Pumo4g01174 659 Coils Coil 499 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01174 Pumo-Chr4 14964150 14973966 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01174 65 321 PRT Gene Family AT5G40870 25.188 6.27e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01174 K00876 - gmx:100803122 1220.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01174 4 14964150 14973966 Pumo4g01174 4 14964150 14973966 ECH