Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01165 ATGGAAAACATAGACACCTCAAAATCTTCACACCAATCTCAAAACCAAAACAAGAATCTTCCCTTGATGCCTATTGAAATAGACAAGTCCTATGAGAAGAGAGTCATGAAGGTTCCAAAAGTAGCAAACAAGAGTGAGAAAAAGTTTCTTGGGGTGAGACAAAGACCTTCAGGAAGATGGATTGCTGAGATCAAGGACTCCTCACAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAGGCTGCCCTGGCTTATGACTGTGCTGCAAGGCTTCTCAGAGGGAGAAATGCCAAAACAAACTTTCCAAACCCTCATGAGGAAGATTGCAGCATTTTGGGTAAGAATCCAAGGGCTTACCAACTTCTTAAGCATGCAGTCATGAAGAACCATGCACTTTCATCATCTCTTTATTCCACAGTCATGCCTTGGAAAAACCAGATCATGAGAGATGAACTTGACACCCTTGTGGAGGAAACTATAGTTTGTTCCATTCCTGAACAAGGCTCTGGCTGTTGTGGAATTTCATTTGGAAGCTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGCTTCTCATGAAGAAACCCCCTAA 609 0.4187 MENIDTSKSSHQSQNQNKNLPLMPIEIDKSYEKRVMKVPKVANKSEKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDKAEEAALAYDCAARLLRGRNAKTNFPNPHEEDCSILGKNPRAYQLLKHAVMKNHALSSSLYSTVMPWKNQIMRDELDTLVEETIVCSIPEQGSGCCGISFGSSKVYSSVVVAPSFSASHEETP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01165 202 MobiDBLite consensus disorder prediction 1 21 - -
Pumo4g01165 202 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Pumo4g01165 202 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Pumo4g01165 202 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Pumo4g01165 202 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Pumo4g01165 202 FunFam ethylene-responsive transcription factor RAP2-11 47 106 - -
Pumo4g01165 202 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Pumo4g01165 202 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Pumo4g01165 202 CDD AP2 47 106 IPR001471 GO:0003700|GO:0006355
Pumo4g01165 202 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 132 - -
Pumo4g01165 202 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01165 Pumo-Chr4 14915726 14916700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01165 45 106 AP2-EREBP Transcription Factor Family AT5G19790 69.355 5.00e-26 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g01165 AP2 2.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01165 - K09286 gmx:100807374 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01165 4 14915726 14916700 Pumo4g01165 4 14915726 14916700 ECH