Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01159 ATGGAGCCCATGGACATCGTTGGCAAATCAAAGGAAGACGCTTCGCTTCCTAAAGCAACAATGACAAAAATTATTAAAGAGATGTTACCCCCAGATGTACGTGTTGCGAGAGATGCCCAAGATCTATTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTCTCGTCAGAATCCAATGAAGTCTGTAACAGAGAGGAAAAACGGACAATTGCACCTGAGCATGTATTGAAGGCTCTACAGGTTCTTGGATTTGGTGAGTACATTGAAGAAGTTTATGCAGCATATGAACAGCACAAGCTGGAGACCATGCAGGACTCTTTGAAGGGTGGTAAATGGAGCAATGTAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGGATGAATGGTGGAGCCATTGCTTCCAAGCAGCCAGATGCTGACCAAAGTTTAGATAGTTAA 471 0.4374 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREEKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNVAEMTEEEALAEQQRMFAEARARMNGGAIASKQPDADQSLDS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01159 156 FunFam Negative cofactor 2 beta 6 143 - -
Pumo4g01159 156 Coils Coil 115 135 - -
Pumo4g01159 156 Gene3D Histone, subunit A 4 143 IPR009072 GO:0046982
Pumo4g01159 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Pumo4g01159 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Pumo4g01159 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01159 Pumo-Chr4 14848705 14853058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01159 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 83.766 2.08e-93 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo4g01159 CBFD_NFYB_HMF 3.4e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01159 K21751 - gmx:100807912 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01159 4 14848705 14853058 Pumo4g01159 4 14848705 14853058 ECH