Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01156 ATGGCAGAAGCAGAAGACACCCTTCAAGCCTCGCCTATGAACGAAGCCAAGAAGAAGATGAAGAAGAATAAGAAGAAGAGCGACAAAAAAAGACCTCGGGGTTTTGCTACCGAGGAGCGTCCAGAAGAAGAAGAGGAGAATGGGAACGATACAGATAGCGATGGAGAATCCTCGAAGAAGAAGAAAAAGGTGGAAGGAGAAAGTGAAGTGGAAGAGAGAAAGGTGAAGAACAACGGTGGCTCTGGAATTATGAGTACCGAGTCATTTGAATCTCTGGGATTGTCTGAACCTACTTATAAAGCCATCATGGATATGGGATTCCACCACATGACTCAGATTCAAGCGAGGGCAATTCCGCCACTTTTGATTGGAAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTCTTAATTCCTGCTGTGGAGCTGTTGTACAATGTTAAGTTTACACCTCGTAATGGAGCTGGTGTTATTGTTATATGCCCAACTAGAGAGCTTGCAATACAGACGCATGCTGTGGCCAAGGAGCTTCTCAAGTATCACTCACAAACTCTTGGATTGGTTATTGGAGGTTCAGCTAGAAAAGTTGAAGCTGAACGCATTGCTAAAGGGTTAAATCTATTGGTAGCAACTCCTGGTCGTCTTCTAGATCATCTTCAAAACACAAAAGGATTCATATATAAAAACTTGAAGTGCCTCATGATCGATGAAGCTGACAGGATCTTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATCAAGATCCTTCCAAAGAATAGGCAAACAGCTCTATTTTCGGCTACACAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCATTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAACCAAGGTCACAAACGAAGGATTGCTTCAGGGTTATGTTGTTGTACCCTGTGCCAAGCGCTTTATTGTTCTCTATTCCTTTTTGAAGAGACACCAGTCAAAAAAAGTTATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCACGCAGACATTCTTAATCTCATTCAGTTGAATTGCTCGAGTATTCATGGAAAACAAAAGCAGCAGACCCGAACAACTACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGGATCTTGCTATGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCACCGGGTTGGTAGAACAGCTCGTGGTGAAGGTGGAAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCTAAGGTCCCTGTTAAAGAATATGCCTATGATGAAAAGAAGGTGGCAAACGTACAATCTCACCTGGAGAATTTGGTAGTCAACAATTTTTATTTGAACAAGATGGCAAAAGAAGCTTATAGATCATACATATTAGCATACAACTCTCATTCCATGAAGGATATATTCAATGTTCACCGTCTGGATTTGCAGGCCGTTGCTTCTTCGTTCTGTTTTTCAAACCCACCAAATGTGACTCTGAACATAAACAGCAGTAAGCAAAGGAAGAAAATGCGTAAAGTTGATGGAAGTAGACATGGATTCAGTGACAACGATCCATATGGAAAGAGAAATGCTGATGATAAGCGGCAGTTTGTGAGGCACTAG 1719 0.42 MAEAEDTLQASPMNEAKKKMKKNKKKSDKKRPRGFATEERPEEEEENGNDTDSDGESSKKKKKVEGESEVEERKVKNNGGSGIMSTESFESLGLSEPTYKAIMDMGFHHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVIVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSARKVEAERIAKGLNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLIQLNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVVNNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDLQAVASSFCFSNPPNVTLNINSSKQRKKMRKVDGSRHGFSDNDPYGKRNADDKRQFVRH 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01156 572 CDD SF2_C_DEAD 308 438 - -
Pumo4g01156 572 MobiDBLite consensus disorder prediction 536 572 - -
Pumo4g01156 572 Gene3D - 308 548 IPR027417 -
Pumo4g01156 572 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 87 115 IPR014014 GO:0003724
Pumo4g01156 572 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 239 247 IPR000629 -
Pumo4g01156 572 SMART ultradead3 106 311 IPR014001 -
Pumo4g01156 572 PANTHER RNA HELICASE 30 475 - -
Pumo4g01156 572 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 293 IPR014001 -
Pumo4g01156 572 FunFam RNA helicase 304 534 - -
Pumo4g01156 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 442 IPR027417 -
Pumo4g01156 572 Pfam Helicase conserved C-terminal domain 323 427 IPR001650 -
Pumo4g01156 572 MobiDBLite consensus disorder prediction 1 85 - -
Pumo4g01156 572 CDD DEADc_DDX18 98 295 IPR044773 GO:0003724|GO:0005524
Pumo4g01156 572 MobiDBLite consensus disorder prediction 52 76 - -
Pumo4g01156 572 SMART DUF4217_3 468 531 IPR025313 -
Pumo4g01156 572 Pfam DEAD/DEAH box helicase 111 282 IPR011545 GO:0003676|GO:0005524
Pumo4g01156 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 295 IPR027417 -
Pumo4g01156 572 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 467 IPR001650 -
Pumo4g01156 572 SMART helicmild6 347 428 IPR001650 -
Pumo4g01156 572 MobiDBLite consensus disorder prediction 547 572 - -
Pumo4g01156 572 Gene3D - 33 297 IPR027417 -
Pumo4g01156 572 Pfam Domain of unknown function (DUF4217) 469 529 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01156 Pumo-Chr4 14828905 14834342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01156 87 446 Eukaryotic Initiation Factors Gene Family AT3G13920 31.044 7.03e-47 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01156 K13179 - gmx:100798885 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01156 4 14828905 14834342 Pumo4g01156 4 14828905 14834342 ECH