Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01125 ATGTCTCATCTCAACTGGGAAGCCGATAAAATGTTAGATTTGTATATTCACGATTATCTCATGAAGAGACAATTACATGCTACAGCAAGAATATTTCAGGCTGAAGGAAATGTTTCGACGGATCCTGTTGTTATAGATGCACCTAGTGGTTTTCTCTTTGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCGAGGGCAAATCAGAAGCACCCAGAAGCAGCAGTATCTTACAGTAAGAGTCAACAAATTAAGGCCCGACTAATGCAGAAGCAACAGGAGCAAGAGCTTCAGAATACAAACCAGAATCAACAAATGCAACTCTTATTGCAAAGACATGCTCAGCAGCGGCAACATCTTCGCGGAACTCAACTTATTAGTGGCAGTGCTAGCTGTCCTATTAGCAATGATCCTTTGATGAGGCAGAACCGGGCAACTTCTAATGCTATGGCAACAAAAACATATGAGGACAGGTTGAAGCTTCCACTTCTGAAAGATGCTTTAGAAGATGCAAGCATTCAGCAAAAAGTGGCTGATGATGTTGGTCAGCTTCTAAACCCAAACCATGCCTTATTGTTGAAAGCAGCAGCAACAACTGGTGAACAGGCTACAGGACAGACATTGCTCGGTGCACCTAGCATTTTACAGGGGAATATTCAACATGTTCAAAATCTGAACCAGAAACATCCAGGGTCTACACAAGACATAAAGAGTGATATGAATGCAATGATGAGGTCTCAAGCTGTTGTTTCGGAAGGATCCTTTATCGGCTGTCATGGTTCAAATCAAGGTGGTAGCAATTTGACTCTGAAAGGATGGCCTCTAGCAGGACTGGATGAGCTTCGCTCAGGATTTCTCCAGCCGAATAATTTGATGCAGTCTTCGCAATCTTTCAATCAACTTTCTCTACGGCAGCAACTTATGGTTCAGGCACAACAAAATTTGATTTCTCCTTCTGCCAGTGATTTTGAGAGCAGAAGACTCAGGATGCTTTTAAATGATCAAAACATGGCTCTTATGAAAGATAGCCAATCAAATTCTGTAGGTGATTTAATTCCCGATAACAGGTCACCTGCACAAGTTGGTTCCTCAGTGTTGCCCCATCCAGACTCAGATATGTTCCTTAAGCAACAAATTCAAAAGAGTAGTCAGCAGCTTCAACAATATTCACAGCATCCTCTTTCAAGCCATCAGTCTGAGAGTCTCCAGCAGCAAGAAAAAATTGGTCCTGGAAGCATGACAGTAGAGGGCAATGTGTCCAATAGCTTACAAGGAAGCGGCCAGGTTTCCAAAAGTAAGACAGGGCGAAAGCGAAAACCAGCATCATCTTCAGGTCCTGCCAATAGCTCTGGAACTGCAAACACCACAGGACCACCTACGAGTTCACCTTCAACACCATCTACACAAACACCTGGAGACATGATGACAGTGTCAACTCTGCAACAGAATGTTCCTTCCTCTAAGCCATCATTTATGTTTGGTACTGATGGTTTGGGCTCACTAACGTCAGCACAGAATCAATTGGCTGATATGGATCACCTTGTGGGTGATGGATGTTTGGGTGACAATGTCGAGTCATTCTTATCTCCTGATGATGCAGACGTTGGAGAAAAAGTTGGCAAAGGATTCTCATTCAAGGAGATCAAGCATATAATGGCAAGTTCACATAAAGTTGAGTGTTGTCATTTCTCATCAGATGGAAAACTTCTTGCTACAGGTGGCCATGATAACAAGGCTTCTTTGTGGTGCACAGAATTGTTTAACCTGAAATCTACACTTGAAGAGCACAGTGAATGGATAACTGATGTTCGATTTTGTCCAAGCATGTTGCGTGTTGCTACATCCTCAGCAGACAAAACTGTTAGGGTTTGGGATGTTGATAATCCAAGTTATTCTCTTCGAACATTCACAGGACATGCAACAACTGTGATGTCACTAGATTTTCACCCTAGCAAAGATGACCTTATTTGCTCTTGTGACAATAGTGAGATAAGATACTGGAGTATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACTCAGATGAGATTTCAACCTTGTTTGGGAAGGCTTCTTGCAGCTGTAGTGGATAATTTTGTATCCATTTTTGATGTGGAAACCCTGGGTTGCAGACAAAAATTACAGGGCCATAACAATGTTGTCCGCTCTGTGTGCTGGGATTTGTCTGGAAAATTTCTGGCTTCTCTTAGTGATGATCTGGTTAAAGTATGGACTGTTGGATCTGGTGGCAAAGGGGAATGCATTCACGAGTTGACCACAACTGGGAGCAAATTCAACACCTGTGTTTTCCATCCCTTCTATCCTGTGCTGGTCATTGGCTGCCATGAGACTATTGAACTGTGGGACTTCAGTGGCAACAAGACAATGACTGTGCATGCACATGACAAGGTTGTATCTTCCTTGGCAGTATCAAATGTTACTGGCTTGCTGGCTTCAACTAGTCATGACAAGCATTTCAAGATATGGAAGTGA 2502 0.4277 MSHLNWEADKMLDLYIHDYLMKRQLHATARIFQAEGNVSTDPVVIDAPSGFLFEWWSVFWDIYIARANQKHPEAAVSYSKSQQIKARLMQKQQEQELQNTNQNQQMQLLLQRHAQQRQHLRGTQLISGSASCPISNDPLMRQNRATSNAMATKTYEDRLKLPLLKDALEDASIQQKVADDVGQLLNPNHALLLKAAATTGEQATGQTLLGAPSILQGNIQHVQNLNQKHPGSTQDIKSDMNAMMRSQAVVSEGSFIGCHGSNQGGSNLTLKGWPLAGLDELRSGFLQPNNLMQSSQSFNQLSLRQQLMVQAQQNLISPSASDFESRRLRMLLNDQNMALMKDSQSNSVGDLIPDNRSPAQVGSSVLPHPDSDMFLKQQIQKSSQQLQQYSQHPLSSHQSESLQQQEKIGPGSMTVEGNVSNSLQGSGQVSKSKTGRKRKPASSSGPANSSGTANTTGPPTSSPSTPSTQTPGDMMTVSTLQQNVPSSKPSFMFGTDGLGSLTSAQNQLADMDHLVGDGCLGDNVESFLSPDDADVGEKVGKGFSFKEIKHIMASSHKVECCHFSSDGKLLATGGHDNKASLWCTELFNLKSTLEEHSEWITDVRFCPSMLRVATSSADKTVRVWDVDNPSYSLRTFTGHATTVMSLDFHPSKDDLICSCDNSEIRYWSIKNGSCTGVFKGGATQMRFQPCLGRLLAAVVDNFVSIFDVETLGCRQKLQGHNNVVRSVCWDLSGKFLASLSDDLVKVWTVGSGGKGECIHELTTTGSKFNTCVFHPFYPVLVIGCHETIELWDFSGNKTMTVHAHDKVVSSLAVSNVTGLLASTSHDKHFKIWK 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01125 833 Coils Coil 85 105 - -
Pumo4g01125 833 Pfam LisH 10 36 IPR006594 GO:0005515
Pumo4g01125 833 CDD WD40 547 833 - -
Pumo4g01125 833 Pfam WD domain, G-beta repeat 633 668 IPR001680 GO:0005515
Pumo4g01125 833 Pfam WD domain, G-beta repeat 589 625 IPR001680 GO:0005515
Pumo4g01125 833 Pfam WD domain, G-beta repeat 713 747 IPR001680 GO:0005515
Pumo4g01125 833 Pfam WD domain, G-beta repeat 797 833 IPR001680 GO:0005515
Pumo4g01125 833 Pfam WD domain, G-beta repeat 554 582 IPR001680 GO:0005515
Pumo4g01125 833 ProSiteProfiles Trp-Asp (WD) repeats profile. 636 677 IPR001680 GO:0005515
Pumo4g01125 833 MobiDBLite consensus disorder prediction 344 474 - -
Pumo4g01125 833 ProSiteProfiles Trp-Asp (WD) repeats profile. 551 582 IPR001680 GO:0005515
Pumo4g01125 833 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 634 IPR001680 GO:0005515
Pumo4g01125 833 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 593 628 - -
Pumo4g01125 833 SMART WD40_4 544 583 IPR001680 GO:0005515
Pumo4g01125 833 SMART WD40_4 629 668 IPR001680 GO:0005515
Pumo4g01125 833 SMART WD40_4 794 833 IPR001680 GO:0005515
Pumo4g01125 833 SMART WD40_4 754 792 IPR001680 GO:0005515
Pumo4g01125 833 SMART WD40_4 671 707 IPR001680 GO:0005515
Pumo4g01125 833 SMART WD40_4 586 625 IPR001680 GO:0005515
Pumo4g01125 833 SMART WD40_4 710 748 IPR001680 GO:0005515
Pumo4g01125 833 Gene3D - 539 678 IPR015943 GO:0005515
Pumo4g01125 833 Gene3D - 679 833 IPR015943 GO:0005515
Pumo4g01125 833 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 636 673 - -
Pumo4g01125 833 ProSiteProfiles Trp-Asp (WD) repeats profile. 801 833 IPR001680 GO:0005515
Pumo4g01125 833 MobiDBLite consensus disorder prediction 439 474 - -
Pumo4g01125 833 SUPERFAMILY WD40 repeat-like 544 833 IPR036322 GO:0005515
Pumo4g01125 833 PANTHER TRANSCRIPTION ACTIVATOR MSS11 89 833 - -
Pumo4g01125 833 MobiDBLite consensus disorder prediction 344 364 - -
Pumo4g01125 833 ProSitePatterns Trp-Asp (WD) repeats signature. 612 626 IPR019775 -
Pumo4g01125 833 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pumo4g01125 833 MobiDBLite consensus disorder prediction 375 431 - -
Pumo4g01125 833 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 801 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01125 Pumo-Chr4 14430874 14440097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01125 630 832 Miscellaneous Gene Families AT5G08390 25.238 7.90e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pumo4g01125 WD40 0.036 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01125 - - gmx:100801265 1415.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01125 4 14430874 14440097 Pumo4g01125 4 14430874 14440097 ECH