Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01123 ATGGCGTTGCTCATTGTTCTCGTGTTCGTTCTGCAGCTGAGTTCGAGTGTACGAGTGAACTCGGAGCCGACTCAGGACAAGCAAGCCCTCCTTGCTTTCCTCTCCCAAACCCCACACTCGAACCGTCTCCAATGGAACGCTTCTGCTTCGGCGTGCGACTGGGTGGGCGTGAAATGCGACGCCTCACGCTCCTTCGTGTACTCGCTCCGTTTACCCGCCGTCGACCTCGTGGGTCGGGTCCCACCCGGTACAATCGGTCGCTTAACCCAGCTTCGGGTCCTCAGTCTCCGCTCCAACGCCCTCACCGGCGAGATCCCTTCCGATTTCTCAAACCTAACCTTCCTCCGCAGCCTCTACCTCCAGAAGAACCAATTCTCCGGCGAGTTCCCTCCGAGTCTGACTCGCCTCACTCGCTTGACTCGCTTGGATCTCTCCTCCAACAACTTCACCGGCCAAATCCCTTTCTCTGTTAACAACTTAACCCACCTCACTGGCCTCTTCTTAGAACACAACGAATTCTCCGGCAAAATCCCAAGCATCACTGTGAAGTTGGTTAACTTCAACGTTTCCTATAACAATCTCAACGGTTCCATCCCGGAAACACTGTCTACGTTCCCGGAATCCTCATTCGCCGGAAACATAGATCTCTGCGGACCGCCGTTGAAGCAGTGCAACCCGTTCTTCCCGGCGCCGGCGCCGTCTCCGTCGGAGAATTCAACCCCGATGCGGACTCATAAGAAGTCCAAGAAGCTCTCCACCGGCGCCATTGTCGCAATCGTTGTAGGGTCTGTTCTCGCCTTGGCGTTGCTGCTGCTGCTTCTGTTGCTATGTCTCCGAAGGCGGCGGAGGCAACCCGCGAAGGTGCCGAAGCCGGTGGCGGCGTCGCGTGCCGCGCCGGCGGAGGCGGGGACGTCGTCGTCGAAGGAGGATATCACCGGGGGTTCGGCGGAAGCGGAGAGGAACAAGCTTGTGTTCTTCGAAGGGGGAATATACAGTTTCGATTTGGAGGATTTGTTGAGGGCTTCGGCGGAGGTGTTGGGGAAGGGTAGCGTGGGGACTTCGTATAAAGCGGTGCTGGAAGAAGGAACCACCGTGGTGGTGAAGAGGCTCAAAGATGTTGTGGTGACGAAGAAAGAGTTCGAGTTGCAAATGGAGGTTCTCGGGAAGATTAAGCACGAGAATGTGGTTCCTCTCAGAGCCTTTTACTTCTCCAAGGACGAGAAATTGCTCGTTTACGATTACATGTCCGCTGGGAGCTTGTCTGCGCTGCTACACGGGAGCAGAGGGTCTGGGCGAACACCACTCGACTGGGACAGCCGTATGAGAATAGCCCTAGGAACCGGAAGAGGGCTGGCATGCCTCCACGTGGCAGGCAAGGTGGTCCACGGCAACATCAAATCCTCCAACATCCTCCTCCGAGGACCGGACCAGGATGCCGGCGTTTCCGACTTCGGCCTCAACCCCTTGTTCGGAAACGGAGCCCCGTCGAACCGCGTCGCGGGTTACCGGGCACCGGAAGTGGTCGAAACCCGAAAGGTGAGCTTCAAGTCTGACGTGTACAGCTTCGGAGTGTTGCTGTTGGAGCTTCTAACGGGGAAAGCGCCAAACCAAGCCTCGCTCGGGGAAGAGGGCATTGATCTTCCGAGGTGGGTCCAGTCAGTTGTGCGCGAAGAGTGGACCGCTGAGGTGTTCGATGCGGAGCTCATGAGGTTCCACAACATCGAGGAGGAGATGGTTCAGCTGTTGCAAATCGCGATGGCGTGTGTTTCCGTTGTGCCTGATCAGAGACCCAACATGCAGGACGTGGTGCGCATGATTGAGGACATTAACCGGGGCGAGACCGATGATGGCTTGCGACAATCTTCTGACGACCCTTCCAAAGGATCCGAGGGTCATACGCCACCCCCGGAGTCAAGGACTCCACCTAGGTCACTCACACCTTAA 1944 0.5705 MALLIVLVFVLQLSSSVRVNSEPTQDKQALLAFLSQTPHSNRLQWNASASACDWVGVKCDASRSFVYSLRLPAVDLVGRVPPGTIGRLTQLRVLSLRSNALTGEIPSDFSNLTFLRSLYLQKNQFSGEFPPSLTRLTRLTRLDLSSNNFTGQIPFSVNNLTHLTGLFLEHNEFSGKIPSITVKLVNFNVSYNNLNGSIPETLSTFPESSFAGNIDLCGPPLKQCNPFFPAPAPSPSENSTPMRTHKKSKKLSTGAIVAIVVGSVLALALLLLLLLLCLRRRRRQPAKVPKPVAASRAAPAEAGTSSSKEDITGGSAEAERNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFELQMEVLGKIKHENVVPLRAFYFSKDEKLLVYDYMSAGSLSALLHGSRGSGRTPLDWDSRMRIALGTGRGLACLHVAGKVVHGNIKSSNILLRGPDQDAGVSDFGLNPLFGNGAPSNRVAGYRAPEVVETRKVSFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMACVSVVPDQRPNMQDVVRMIEDINRGETDDGLRQSSDDPSKGSEGHTPPPESRTPPRSLTP 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01123 647 SUPERFAMILY Protein kinase-like (PK-like) 344 609 IPR011009 -
Pumo4g01123 647 MobiDBLite consensus disorder prediction 288 313 - -
Pumo4g01123 647 MobiDBLite consensus disorder prediction 609 626 - -
Pumo4g01123 647 Pfam Leucine rich repeat 78 125 IPR001611 GO:0005515
Pumo4g01123 647 FunFam pollen receptor-like kinase 1 309 414 - -
Pumo4g01123 647 Gene3D Ribonuclease Inhibitor 184 224 IPR032675 -
Pumo4g01123 647 MobiDBLite consensus disorder prediction 609 647 - -
Pumo4g01123 647 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Pumo4g01123 647 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 415 620 - -
Pumo4g01123 647 Gene3D Transferase(Phosphotransferase) domain 1 415 627 - -
Pumo4g01123 647 SUPERFAMILY L domain-like 25 205 - -
Pumo4g01123 647 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Pumo4g01123 647 Gene3D Phosphorylase Kinase; domain 1 307 414 - -
Pumo4g01123 647 FunFam Probable inactive receptor kinase RLK902 23 181 - -
Pumo4g01123 647 CDD STKc_IRAK 346 609 - -
Pumo4g01123 647 PANTHER OS05G0588300 PROTEIN 3 622 - -
Pumo4g01123 647 Pfam Protein kinase domain 343 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01123 647 ProSiteProfiles Protein kinase domain profile. 340 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01123 Pumo-Chr4 14402599 14406088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01123 4 627 Receptor kinase-like Gene Family AT5G58300 52.524 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo4g01123 Pkinase 6.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01123 - - gmx:100806857 1076.23