Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01122 ATGGCATCACCATCCGAACTAAGCCTGGATTGCAAGCCCCAAAGCTATTCCTTGCTACTCAAATCATTTGGAGATCAAACTGATCAGACCTACAAGCTTGAAGAATTCCTCTCTCGCTTGGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTTCTCACCAACGCCATGGAGGCTTCAAGGCAGCAACTTCAGGCCTTCAAAGTAAACCATGGCACAAAGCCAGTTCTTGAAGAATTCATACCCATGAAGCACTTGGCCTCAGAGAGCTCAGAGAAGGCAACAAACATGTCTGACAAGGCAAATTGGATGACATCTGCACAACTGTGGAGCCAAGCAAGCGAAGGAACAAAACAACAATCAACAATCACTTCATCGCCTAATGATGCTGATATAGGCTTCAGCATAAGCCCGAAGCTGGCTCTAGAAAACAAACAGAGGAACCGTGGAGGAGGAGCCTTCCTTCCATTCTCAAAGGAACGAAACTCCTGCCAGGGCTCTACATTGCGGCCTCTTCCTGAACTGGCCCTTGCTTCTGCGGAGAAAGAAATGGAGGACAAGAAACGTGGAGAGGTAGAGAAGGGAGTTTCATGTCATCAGAATAAGAAGGAGAATTCTGGCAGTGATGGAGCTGTGGTTGATCAAGGAAAAGGGGGTAGCCCAGTTGCATCATCTCATGCACAAACAACCACTACTACACAAACTCATAGGAAAGCTAGAAGGTGTTGGTCACCAGACCTGCACCGAAGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCACAGGTGGCGACCCCAAAGCAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTTCACACTAGAAGACCCAGTCCAAGTCCTCAAACGGGTGCTGCAGCACCACAGCTTGTGGTCCTCGGCGGAATCTGGGTCCCACCGGAATATGCCACGGCGGCACACACAGCCACCCCTACTCTCTACGGCGCCCACCCAACCTCCCACGCACCGACGCCACACTACTGCGCTGCCACTCCCATGCCACAAGAGTTCTACACCGCGGCGACGCCGCAGCCGCTGCTTCCGCCTCCTCCGCCTCACCACAACGCGCTGCACCACCTGCACATGTACAAGGGGGCGGCGCACGGCCACGGATCGCCGGAATCGGACGTTCCCGGCGGCGGGGAGCGGTCGGAGAGCATCGAGGACGGGAAGTCGGAGAGTAGCAGCTGGAAGGGGGAGAGTGGGGAGAACGAAGGGGAGAGGAAAGGGATTGGTGAAGAGAGCAATGGGAGTGAGATCACTCTCAAATTCTAG 1359 0.5261 MASPSELSLDCKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFKVNHGTKPVLEEFIPMKHLASESSEKATNMSDKANWMTSAQLWSQASEGTKQQSTITSSPNDADIGFSISPKLALENKQRNRGGGAFLPFSKERNSCQGSTLRPLPELALASAEKEMEDKKRGEVEKGVSCHQNKKENSGSDGAVVDQGKGGSPVASSHAQTTTTTQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQTGAAAPQLVVLGGIWVPPEYATAAHTATPTLYGAHPTSHAPTPHYCAATPMPQEFYTAATPQPLLPPPPPHHNALHHLHMYKGAAHGHGSPESDVPGGGERSESIEDGKSESSSWKGESGENEGERKGIGEESNGSEITLKF 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01122 452 MobiDBLite consensus disorder prediction 160 249 - -
Pumo4g01122 452 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 426 IPR044787 GO:0003700|GO:0006355
Pumo4g01122 452 Pfam Myb-like DNA-binding domain 248 299 IPR001005 -
Pumo4g01122 452 Coils Coil 33 53 - -
Pumo4g01122 452 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 243 303 IPR017930 -
Pumo4g01122 452 NCBIfam myb-like DNA-binding domain, SHAQKYF class 246 301 IPR006447 GO:0003677
Pumo4g01122 452 MobiDBLite consensus disorder prediction 393 452 - -
Pumo4g01122 452 FunFam Myb family transcription factor 245 303 - -
Pumo4g01122 452 Gene3D - 245 303 - -
Pumo4g01122 452 MobiDBLite consensus disorder prediction 118 138 - -
Pumo4g01122 452 MobiDBLite consensus disorder prediction 229 246 - -
Pumo4g01122 452 SUPERFAMILY Homeodomain-like 243 304 IPR009057 -
Pumo4g01122 452 MobiDBLite consensus disorder prediction 187 208 - -
Pumo4g01122 452 MobiDBLite consensus disorder prediction 409 442 - -
Pumo4g01122 452 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01122 Pumo-Chr4 14368356 14371041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01122 1 452 G2-like Transcription Factor Family AT2G03500 50.206 3.34e-131 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo4g01122 Myb_DNA-binding 9.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01122 - - gmx:100807925 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01122 4 14368356 14371041 Pumo4g01122 4 14368356 14371041 ECH