Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01121 ATGACGATGGACGACGATAGCTCCATATATGTAGGGGGTCTTCCCTACGACGCCACCGAAGAAACCATTCGCACTGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAGATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTAACTTTCACAAATCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGAACCATTGACGGGCGTGTGGTTAAGGTTAATGGGGTGAGGGCTCGTGGGGGCAGGTCAAATTTTGGCAGAGAACGTTATTATTATCATAATGATGAGAGGAATGGAGATTGGGATCGTGGTAGAGACCGAGACCGAGATTATGATCATGATAATAATGATAGGGATGGATATAGGAATCGAAGCAATGATTGGGGTCGAGACCATGATAGGTCTAGAGACCGAGATCAGGACAGGGATAGAAGGTTTGAGCATATGCATGATTATGATCAAGCTAGAGAACCTATGTTAGATAATGACTGGAATCGAGAGGACGATAGAGTTGTAAATGAACAAGAACATAGCAGGGGGCATGGTGGAGATGTGGATAGAGATCACGACATTGATTTGAATGTAGACAGGAAAATGGATAGGACCAGTGATCCTGATAGAAGTTTTGATGAGGATAGAAAAGATCAGTCAAGGGGAAACAATGACTTTAATGTTACAAATCAACATAGCATGGATCTTTCATCAGATTCAGCTGGTACTCACAATGATCAGGTAGAAGCTCAATTAGAGAGGTCAACTCAACAGCTTGATGATCTTAAAAAGGAGGTTTCTCAGATGGAAGAGGGATTGGAAGAGAAAAGACTCCATGTTAAGGAATTACAAAAGCAATCTAAGAAACTGGAGGATGCACTGATCAATGCAAAGAAAAACTCTTCGTATCGTCAGATGCAGTTGATGAAGCTGCATAAATGTTTTCTGCAAGTGAAAGATTGCACAGAAAGACTTAAAACTAGTGAAAAAGAACTTCAGGCTCTAATTGATACAGCAATGTCAGAGATTGATGGTGATGGTGTTGGATTAAAGGATGGACAACTAACAAATGGAAGTCTTGATGGTAGATAG 1101 0.4142 MTMDDDSSIYVGGLPYDATEETIRTVFNLYGAILDVKIINDQRTRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRARGGRSNFGRERYYYHNDERNGDWDRGRDRDRDYDHDNNDRDGYRNRSNDWGRDHDRSRDRDQDRDRRFEHMHDYDQAREPMLDNDWNREDDRVVNEQEHSRGHGGDVDRDHDIDLNVDRKMDRTSDPDRSFDEDRKDQSRGNNDFNVTNQHSMDLSSDSAGTHNDQVEAQLERSTQQLDDLKKEVSQMEEGLEEKRLHVKELQKQSKKLEDALINAKKNSSYRQMQLMKLHKCFLQVKDCTERLKTSEKELQALIDTAMSEIDGDGVGLKDGQLTNGSLDGR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01121 366 PANTHER GEO13361P1-RELATED 6 162 - -
Pumo4g01121 366 CDD RRM_SF 9 80 - -
Pumo4g01121 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Pumo4g01121 366 MobiDBLite consensus disorder prediction 102 225 - -
Pumo4g01121 366 Coils Coil 248 303 - -
Pumo4g01121 366 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Pumo4g01121 366 MobiDBLite consensus disorder prediction 102 249 - -
Pumo4g01121 366 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 195 - -
Pumo4g01121 366 Gene3D - 2 97 IPR012677 -
Pumo4g01121 366 MobiDBLite consensus disorder prediction 226 249 - -
Pumo4g01121 366 Coils Coil 321 341 - -
Pumo4g01121 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Pumo4g01121 366 SMART rrm1_1 8 80 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01121 Pumo-Chr4 14361972 14365859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01121 7 79 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 6.93e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01121 - - gmx:100816804 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01121 4 14361972 14365859 Pumo4g01121 4 14361972 14365859 ECH