Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01113 ATGAAGGGGGAAGTGCAGCTTCAGCCTCCAGCGGTTATGCAAAACCCTAGTGATTCAGACCCTTTGCTCCATAACCAGGAGGAGGATGAATCACCGGGAAGCTCTGGTGAGATCAAGGACGAGGAAGAAGACGTTGAGGCTGGCTTACTCCCCTGCTGTCGAATTTGCCTCGAAAGCGATTCCGACCCAGAGGATGAATTGATATCTCCATGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGGAAGGATTTGCCTTCTCACACTGCACCACCTGCAAAGCCCAATTTCACCTTAGAGTTGAATTGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAAACTGTGATTGCTGCTATTGGAGGCTTTGCGTACATCATGGACAAAGATGGTTCCTTCAGGAACTCATTTGATGATGGCTGGGATAGGATACTGTCAAAGCATCCTATTCCATTTTATTATTGTATTGGAGTGCTGGCCTTCTTTGTACTGATTGGGTTTTTTGGTCTCATACTGCATTGCTCCTCCCTCAATAGCAATGACCCCAGAATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGCATCTTGGATTGCTTTCCCGCATCAATGGAGGCGTGCTTTGCCCTTGTGGTTGTTTTCGTTGTCATCTTTGCAATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGGAATACATAGTAGAGGATCTTCATGGCTGTTATTTCCCACCGAAGTTGGACCCAGAACATGAAGGTCGCTTGAAAATGCTTAAGCTCTTGTAA 927 0.4574 MKGEVQLQPPAVMQNPSDSDPLLHNQEEDESPGSSGEIKDEEEDVEAGLLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGSFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGCYFPPKLDPEHEGRLKMLKLL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01113 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 117 IPR013083 -
Pumo4g01113 308 ProSiteProfiles Zinc finger RING-CH-type profile. 45 110 IPR011016 GO:0008270
Pumo4g01113 308 SMART ringv_2 52 104 IPR011016 GO:0008270
Pumo4g01113 308 Pfam RING-variant domain 53 103 IPR011016 GO:0008270
Pumo4g01113 308 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 11 308 - -
Pumo4g01113 308 SUPERFAMILY RING/U-box 51 108 - -
Pumo4g01113 308 CDD RING_CH-C4HC3_MARCH 53 104 - -
Pumo4g01113 308 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01113 Pumo-Chr4 14260069 14263965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01113 1 308 C3H Transcription Factor Family AT1G11020 80.062 1.17e-172 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01113 - - gmx:100818950 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01113 4 14260069 14263965 Pumo4g01113 4 14260069 14263965 ECH