Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01112 ATGGATCCAAATGAATCGGACAACAATCGAAGGACAGCTTTGCATATAGCGGCATCTCAAGGAAAAGAGAACTGTGTTTTGCTTCTCTTAGATTATGGGGCGGATCCCAACATTAGAGATTTGGAAGGTAATGTGGCACTATGGGAAGCTATAGTGGGAGGACATGACTCAATGAGCAAGCTGCTATCAGAGAATGGAGCTAACTTGCAATGCGGGGATGTGGGACAATTTGCATGTACTGCCGCTGAACAAAACAGCCACAACTTGCTGAAGGAAATAATGCGCTACGGAGGAGATATCACGCTTCCAAGCAGCACTACTGGGACCACTGCTTTGCACGTTGCAGTCTCAGAAGGCAACGTTGAGATTGTCAAATTCCTTTTGAATCACGGGGCAAGTATTGACAAGCCTGACAACCATGGCTGGACCCCAAGAGCTCTAGCAGATCAGCAGTCACATACAGAGATCAAAGCCCTTTTTGACTCCACTGGGGACCCTAAGGTTCAGTCTAATGTTGCTATTCCCGAGAGGAATAGCAAGATCCGGTACCTTGGCAGGTTCACAAGTGAGCCAACCATGCCTTTACCCCTTGATGGCTCGTTCCATGGAGCTGATGGCTCTTGGAGCCACGGCCAGAGCCAGAGCCAGAGCCGGCCCAGGCGTCGGAGCAACAACTACCATAACTCGCTCTTTGGGATCATGTCAGCAGCACACAATGGTGAAAAGGACCTGCTTTCAGCTGTTGACATGAATAACAATGCAAGGAATGGTATGACTATGAAGAGTAGTAGTAGTAGAAGTGCAGTTTGTCCAGCTAGAGTTAAAATTAGTTGCCCTGAGAAGGGTGAGATTGTTGGGAAGCTTGTTTTACTACCTGCAAACTTCCAAGAGCTAGTTGAGATTGGAGCCAAGAAATTTGGTTTCTATCCTGCCAAGGTTGTGTGCAAAGATGGAGGTGAAATTGAAGATATAGAGGTGATTAGGGATGGTGACCATCTTGTTTTTGTTGGTGCTAGTGGGGTGCTAGAATCCAATTGTACAGCTCCAGCACCACTAATGAATGGTGTGCATATATAG 1077 0.4698 MDPNESDNNRRTALHIAASQGKENCVLLLLDYGADPNIRDLEGNVALWEAIVGGHDSMSKLLSENGANLQCGDVGQFACTAAEQNSHNLLKEIMRYGGDITLPSSTTGTTALHVAVSEGNVEIVKFLLNHGASIDKPDNHGWTPRALADQQSHTEIKALFDSTGDPKVQSNVAIPERNSKIRYLGRFTSEPTMPLPLDGSFHGADGSWSHGQSQSQSRPRRRSNNYHNSLFGIMSAAHNGEKDLLSAVDMNNNARNGMTMKSSSSRSAVCPARVKISCPEKGEIVGKLVLLPANFQELVEIGAKKFGFYPAKVVCKDGGEIEDIEVIRDGDHLVFVGASGVLESNCTAPAPLMNGVHI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01112 358 ProSiteProfiles Ankyrin repeat region circular profile. 107 139 - -
Pumo4g01112 358 ProSiteProfiles Ankyrin repeat region circular profile. 9 40 - -
Pumo4g01112 358 SMART ANK_2a 42 71 IPR002110 GO:0005515
Pumo4g01112 358 SMART ANK_2a 9 38 IPR002110 GO:0005515
Pumo4g01112 358 SMART ANK_2a 73 102 IPR002110 GO:0005515
Pumo4g01112 358 SMART ANK_2a 107 136 IPR002110 GO:0005515
Pumo4g01112 358 PANTHER POTASSIUM CHANNEL AKT1 1 336 IPR045319 GO:0005249|GO:0006813
Pumo4g01112 358 ProSiteProfiles KHA domain profile. 273 353 IPR021789 -
Pumo4g01112 358 SUPERFAMILY Ankyrin repeat 2 161 IPR036770 -
Pumo4g01112 358 Pfam Ankyrin repeats (3 copies) 81 166 IPR002110 GO:0005515
Pumo4g01112 358 Pfam Ankyrin repeats (3 copies) 4 70 IPR002110 GO:0005515
Pumo4g01112 358 ProSiteProfiles Ankyrin repeat profile. 107 139 IPR002110 GO:0005515
Pumo4g01112 358 MobiDBLite consensus disorder prediction 194 226 - -
Pumo4g01112 358 Gene3D - 1 162 IPR036770 -
Pumo4g01112 358 ProSiteProfiles Ankyrin repeat profile. 9 41 IPR002110 GO:0005515
Pumo4g01112 358 MobiDBLite consensus disorder prediction 206 226 - -
Pumo4g01112 358 Pfam KHA, dimerisation domain of potassium ion channel 273 335 IPR021789 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01112 Pumo-Chr4 14254523 14258991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01112 1 339 Ion Channels AT2G26650 50.872 1.97e-104 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01112 K21867 - gmx:100819491 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01112 4 14254523 14258991 Pumo4g01112 4 14254523 14258991 ECH