Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01111 ATGTTGGTGCCCATGTCCGTGTGCGGCCAAGAGGAGATTGAGTTGTCAAGAGATGGCAGCCACTACAGTCTCTCCACTGGGATTCTTCCTTCTCTCGGAGCCAAAAGTAACCGCAGAATCAAGCTCAGGCCCTTCATTCTATCACCCTATGACCGCCGTTACAGGATATGGGAAACTTTCCTTGTTATTCTGGTGGTTTATACTGCATGGGTTTCTCCCTTTGAATTCGGATTCTTGAAGAAACCACAAGCACCCCTTTCCATAACCGATAACATTGTCAATGGATTTTTTTTCGTGGATATAGTTCTGACCTTCTTCGTGGCTTACATTGACAAAAGCACCTATTTGATCGTGGATGACCGAAAACAGATTGCTTGGAAATATGCAAGGACTTGGTTGGCCTTTGATGTTATCTCCATCATACCTTCAGAGCTTGTACAAAAGATATCACCTTCTCCTCTTCAATCGTACGGTCTATTCAACATGCTTCGGCTTTGGCGTCTTCGAAGAGTTAGTGCTTTGTTTTCTAGGCTTGAGAAGGACAAAAACTATAATTATTTTTGGGTTCGGTGCGCAAAGCTCATTGCTGTTACCCTCTTTGCTGTCCATTGTGCTGCATGTTTCTATTATCTTATAGCTGCACGTTATCATAATCCCAAGAAGACATGGATTGGGGCAACAATGGGAAATTTCCTTGAACAAAGCTTGTGGACAAGATATGTGACAGCTATTTACTGGTCTATTACTACCTTAACAACAGTTGGTTATGGAGATTTGCATCCAGTGAATTCAAGGGAGATGATCTTTGACATCTTTTATATGCTCTTTAATCTGGGGTTAACAGCATATCTGATTGGTAATATGACCAACTTGGTTGTCCATGGTACAAGTCGAACTAGAAAATTTAGGGATACCATACAAGCTGCCTCAAATTTTGCCCAAAGGAACCAATTGCCTCATCGGTTGCAAGACCAAATGCTTGCACACTTGTGTTTGAAGTATAGAACAGACTCAGAAGGGTTGCAGCAGCAAGAGACACTTGATTCTCTTCCTAAAGCCATCAGATCGAGCATTTCACATTATCTTTTCTATTCTCTGATTGATAAGGTCTACTTGTTTCGTGGGGTTTCAAATGACTTGCTCTTTCAGTTGGTATCAGAGATGAAAGCTGAATATTTTCCACCCAAAGAAGATGTTATCTTGCAAAACGAAGCCCCCACTGACTTTTATATACTAGTCACTGGTGCCGTGGAACTACTAGTTCTTAAAAATGGGCTTGAACAGGTTGTTGGAGAGGCCAAAACTGGTGATCTTTGTGGTGAGATTGGTGTGCTTTGTTATAAGCCACAGCTTTTCACAGTTCGAACGAAGCGACTAAGTCAGTTGCTGAGGCTAAACCGTACTACGTTCTTGAATATTGTTCAGGCCAACGTGGGAGATGGAACCATAATCATGAATAATCTCCTTCAGAATTTGAAAGAGCTCAACGATCCAATCATGGAGGGAGTTTTGGTGGAGATTGAGAACATGTTAGCTCGTGGTAGGATGGACCTACCACTGAGTGTGTGCTTTGCGGCAGGCAAGAGGAGATGA 1593 0.4244 MLVPMSVCGQEEIELSRDGSHYSLSTGILPSLGAKSNRRIKLRPFILSPYDRRYRIWETFLVILVVYTAWVSPFEFGFLKKPQAPLSITDNIVNGFFFVDIVLTFFVAYIDKSTYLIVDDRKQIAWKYARTWLAFDVISIIPSELVQKISPSPLQSYGLFNMLRLWRLRRVSALFSRLEKDKNYNYFWVRCAKLIAVTLFAVHCAACFYYLIAARYHNPKKTWIGATMGNFLEQSLWTRYVTAIYWSITTLTTVGYGDLHPVNSREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAQRNQLPHRLQDQMLAHLCLKYRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLIDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVELLVLKNGLEQVVGEAKTGDLCGEIGVLCYKPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQNLKELNDPIMEGVLVEIENMLARGRMDLPLSVCFAAGKRR 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01111 530 ProSiteProfiles cAMP/cGMP binding motif profile. 372 474 IPR000595 -
Pumo4g01111 530 SUPERFAMILY cAMP-binding domain-like 297 491 IPR018490 -
Pumo4g01111 530 FunFam Potassium channel SKOR 55 293 - -
Pumo4g01111 530 PRINTS EAG/ELK/ERG potassium channel family signature 90 100 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo4g01111 530 PRINTS EAG/ELK/ERG potassium channel family signature 240 257 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo4g01111 530 PRINTS EAG/ELK/ERG potassium channel family signature 284 293 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo4g01111 530 PRINTS EAG/ELK/ERG potassium channel family signature 101 110 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo4g01111 530 PRINTS EAG/ELK/ERG potassium channel family signature 67 74 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo4g01111 530 PRINTS EAG/ELK/ERG potassium channel family signature 266 277 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo4g01111 530 Gene3D Jelly Rolls 336 497 IPR014710 -
Pumo4g01111 530 SUPERFAMILY Voltage-gated potassium channels 49 293 - -
Pumo4g01111 530 FunFam Potassium channel KAT2 360 496 - -
Pumo4g01111 530 Pfam Ion transport protein 55 299 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo4g01111 530 CDD CAP_ED 372 477 IPR000595 -
Pumo4g01111 530 Pfam Cyclic nucleotide-binding domain 392 476 IPR000595 -
Pumo4g01111 530 PANTHER POTASSIUM CHANNEL AKT1 20 527 IPR045319 GO:0005249|GO:0006813
Pumo4g01111 530 Gene3D - 56 293 - -
Pumo4g01111 530 SMART cnmp_10 372 489 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01111 Pumo-Chr4 14250852 14254491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01111 14 528 Ion Channels AT2G25600 71.484 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01111 K21867 - gmx:100819491 1030.01