LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g01097	ATGAACACTACTATCACCACCGTCACCGCCATTACTACCACACGGGACGAACCCGACTACGACAGCAGCTCCTCCTCAATTACGGTACCGGAATCGAGCAGGAGCTGGATGACCAACCTGAGCTTCGGCAGCCGGCGACGCCGGAGCTCGGTCTCCGTCTGCTCGTCGACCGCGGAGAGTCCGCACGCCGCCGCGAAGCCCCACAAGGCAAACCAGGCTGCATGGGAGGCGATGCGGCGGCTCCGGCGGGACAAGGGGCAGGTGGGGCTGGACCACTTCCGGCTGCTGCGGCGGCTGGGGAGCGGCGACATCGGGAACGTGTATCTCTGCCAGATAAGGAACCCCGTGGTGGGGTTGCCGCAGTGCTTCTATGCGATGAAAGTGGTGGACAGAGAGGCACTTGCTATAAGGAAGAAGCTGCAGAGAGCGGAGATGGAGAAGGAGATTCTGGCCATGCTTGATCACCCCTTCTTGCCTACTTTGTACACCGAGTTTGACGCTTCTCATTACTCTTGCTTGGTCATGGAGTTCTGCCCCGGTGGAGACTTGTATGCTGCTCGCCAACGCCAGCCCGGGAAGCGCTTTTCCATAACATCCGCCAAGTTCTATGCGGCTGAGACGCTATTGGCATTAGAGTATCTTCACATGATGGGCATAGTGTACAGGGATTTGAAGCCAGAGAATGTGCTTGTGAGGGAGGATGGGCACATTATGCTTTCGGATTTTGATCTTTCGCTCAAATGCGACGTTGTTCCCAAGCTGTTAAGGAGCAAGACCAGATTGGAACGCAGCATCAAGAGTACAAAGAGATCTGTGCCAGCCTGCACTGCCCCCATGCAGCCTGTGCTGTCATGTTTCTTGTCATCAAGCAAGAAAAAGAAAGCGACCGTGACAACAGTTATAAGGGAAAATGTTGAGGTGGAAGAAAATGATCCGGAGCTGGTGGCCGAGCCCATTGATGCCAAGTCCAAGTCATTTGTGGGGACACATGAGTACTTGGCACCAGAAGTGATTCTGGGGCAAGGACATGGGAGTGCAGTGGATTGGTGGACTTTTGGGGTGTTCTTGTATGAGATGTTATATGGTAGAACACCCTTCAAAGGTGAAAATAATGAGAAAACTCTCGTCAACATTTTGAAGCAGCCCTTGGCTTTCCCTAGAATTGCAGTTAGCAGCAGCAAGGAGTTTGAAGAGATGGTCAAAGTTCAAGACCTTATAAGTAATCTTTTAGTGAAGAATCCAAATAAGAGAATTGGAAGCTGCATGGGTTCTGTTGAGATCAAAAGGCATGAGTTCTTCAAGGGTGTAAATTGGGCCTTAATTAGATCAGTTAGGCCCCCTGAGGTCCCTAGTGAAATGAACAAAATTAGGAGTAGGGTTTTGCTACCAAAACTAAGCAAATCAGACAGGGATCAGCCTTATCAGCTTAGAACTCATCATTTTGAATACTTCTAA	1455	0.5093	MNTTITTVTAITTTRDEPDYDSSSSSITVPESSRSWMTNLSFGSRRRRSSVSVCSSTAESPHAAAKPHKANQAAWEAMRRLRRDKGQVGLDHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREALAIRKKLQRAEMEKEILAMLDHPFLPTLYTEFDASHYSCLVMEFCPGGDLYAARQRQPGKRFSITSAKFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRLERSIKSTKRSVPACTAPMQPVLSCFLSSSKKKKATVTTVIRENVEVEENDPELVAEPIDAKSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLAFPRIAVSSSKEFEEMVKVQDLISNLLVKNPNKRIGSCMGSVEIKRHEFFKGVNWALIRSVRPPEVPSEMNKIRSRVLLPKLSKSDRDQPYQLRTHHFEYF	484

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pumo4g01097	484	FunFam	protein kinase PINOID	178	246	-	-
Pumo4g01097	484	ProSiteProfiles	Protein kinase domain profile.	93	433	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pumo4g01097	484	Gene3D	Transferase(Phosphotransferase) domain 1	320	451	-	-
Pumo4g01097	484	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	219	231	IPR008271	GO:0004672\|GO:0006468
Pumo4g01097	484	CDD	STKc_phototropin_like	91	450	-	-
Pumo4g01097	484	SMART	serkin_6	93	433	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pumo4g01097	484	PANTHER	FLIPPASE KINASE 1-RELATED	38	454	-	-
Pumo4g01097	484	SUPERFAMILY	Protein kinase-like (PK-like)	77	454	IPR011009	-
Pumo4g01097	484	Gene3D	Phosphorylase Kinase; domain 1	91	177	-	-
Pumo4g01097	484	FunFam	serine/threonine-protein kinase D6PK-like	321	451	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g01097	Pumo-Chr4	14058242	14060111	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g01097	9	484	AGC Kinase Gene Family	AT2G26700	58.459	0.0	589

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Pumo4g01097		Pkinase	7.2e-32	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g01097	K08286		-	gmx:100777988	884.789

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo4g01097	4	14058242	14060111	Pumo4g01097	4	14058242	14060111	ECH

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