Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01089 ATGAATTTCTCTGACCATATTCCATCCTTTATGATGTCACCGCCGTCGTTTTCCACAGACACAGATGCCATTGAAGTGAGGCTTCAATTCCCAATGAACAACGAGTCATTGGAGCCCCATTCACCACAGGATCAACCCCCTTCGTTCAAGAGGGCAAGGACCTGTGATAACAGCCTCTCCAATGCAATGGCATGCCCTCCAAGGATGATTCAGCACCCCACAGTTAACAAAGGAACGAGCCACATTTTCTTCAAGACCCGCATTTGTGCAAAATTCAGAGTTGGTGCTTGTAGGAACGGTGAGAACTGCAATTTTGCACATGGGCTTGAAGACATGAGGCAGCCGCCACCAAATTGGCAAGAGCTTGTTGGGTTGCGCAATGAGGAGCGGCAACCGGCGGGGGATTGGGATGATGACCAGAAAATCATACACAAGATGAAGCTGTGCAAGAAGTATTACAATGGGGAGGAATGCCCCTATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCCAAGTTCAGGGATGATTCGGGGAGGTACAGGGAGAGCACAGCTATAAGCATTGGAACTAATGGATCCCCCAAGTCCTATGGTGATGCCTCTAATAATTTAGAAAGTAATAGGGCTGTGAACACTGGCTTAAATGTTCTCCGGGGGAATGTTAAGTCTACCTATTGGAAGACTAAACTGTGCATCAAATTTGAGACAACAGGCCACTGTCCCTTTGGGGATGACTGTCACTTTGCTCATGGGCAAGCAGAGTTACAAGTTCCTGGTGGACGCACTGAGGCAGAAACTGCAGGTGCCATTCCAATTTCAACTAAAGCTACCATTCCAACCTTACCAAGAGCTACATCAGTTTCTTCTAATGAAGCACCTCCTAGCCACAGAGCAAGTGTACCTCCACCAAATGAAGAGGAGCAGGGTAAGAAGTATTTACTGAAGTGGAAAGGACACAGGAAGATCAACCGAATTTATGGTGATTGGCTTGACGATTTACCACTTGTTCATGAATCACAACTTGCCAGGTAG 1035 0.4676 MNFSDHIPSFMMSPPSFSTDTDAIEVRLQFPMNNESLEPHSPQDQPPSFKRARTCDNSLSNAMACPPRMIQHPTVNKGTSHIFFKTRICAKFRVGACRNGENCNFAHGLEDMRQPPPNWQELVGLRNEERQPAGDWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPAKFRDDSGRYRESTAISIGTNGSPKSYGDASNNLESNRAVNTGLNVLRGNVKSTYWKTKLCIKFETTGHCPFGDDCHFAHGQAELQVPGGRTEAETAGAIPISTKATIPTLPRATSVSSNEAPPSHRASVPPPNEEEQGKKYLLKWKGHRKINRIYGDWLDDLPLVHESQLAR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01089 344 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Pumo4g01089 344 SUPERFAMILY CCCH zinc finger 225 257 IPR036855 GO:0046872
Pumo4g01089 344 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Pumo4g01089 344 SUPERFAMILY CCCH zinc finger 143 170 IPR036855 GO:0046872
Pumo4g01089 344 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Pumo4g01089 344 MobiDBLite consensus disorder prediction 282 296 - -
Pumo4g01089 344 MobiDBLite consensus disorder prediction 282 309 - -
Pumo4g01089 344 FunFam Zinc finger CCCH domain-containing protein 78 114 - -
Pumo4g01089 344 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Pumo4g01089 344 Gene3D - 220 258 - -
Pumo4g01089 344 Gene3D - 140 172 - -
Pumo4g01089 344 Gene3D - 76 114 - -
Pumo4g01089 344 FunFam Zinc finger CCCH domain-containing protein 221 258 - -
Pumo4g01089 344 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Pumo4g01089 344 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Pumo4g01089 344 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Pumo4g01089 344 Pfam CCCH-type zinc finger 147 168 IPR041367 -
Pumo4g01089 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 253 IPR000571 GO:0046872
Pumo4g01089 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Pumo4g01089 344 FunFam Zinc finger CCCH domain-containing protein 39 140 172 - -
Pumo4g01089 344 PANTHER CCCH ZINC FINGER/TIS11-RELATED 40 172 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01089 Pumo-Chr4 14001663 14004357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01089 228 257 C3H Transcription Factor Family AT1G68200 60.000 5.55e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo4g01089 zf-CCCH 9.1e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01089 - - gmx:100793865 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01089 4 14001663 14004357 Pumo4g01089 4 14001663 14004357 ECH